FC920893

Overview
NameFC920893
Unique NameFC920893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14210 contig Ccv1_Contig14210:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_THESM (Flap structure-specific endonuclease OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=fen PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.072e-37
Identity = 79/166 (47.59%), Postives = 111/166 (66.87%), Query Frame = 3
Query:  111 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            KE + E+  GRK+AIDA  +IYQFL  + +     L +  G +TSHL G+F RTI L+EAG+KP YVFDG+PP+ KK+EL KR   R +A +    A+  G  E+ +K+++R  K+ +   +D K+LL+LMG+P V+APSE EAQ A +   G V+A AS+D DSL
Sbjct:   12 KELELENLNGRKVAIDAFNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKKKELEKRAETREEALEKWEIALARGELEEAKKYAQRASKINEILIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_CALMQ (Flap structure-specific endonuclease OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=fen PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.908e-36
Identity = 82/183 (44.81%), Postives = 112/183 (61.20%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 605
            MG+  L KL+ DN  + +     E   G+ IA+DA  ++YQFL  + +     L +  G VTSHL G+  RTI LLE G+KP+YVFDG+PP+LK  E+ KR   R  A +D  +AVE G K +  K+++R + +T    D+ KRLL  MGVP V+APSE EAQ A +   G V+A  S+D DS
Sbjct:    1 MGVTELGKLIPDNLRRRVS---LEQLNGKLIALDAYNALYQFLASIRQPDGTPLMDSQGRVTSHLSGLLYRTINLLEYGIKPVYVFDGKPPELKLIEIEKRRRVREKAVEDWIKAVEEGKKSEARKYAQRALFITSDMVDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIVWAAGSQDYDS 180          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_METKA (Flap structure-specific endonuclease OS=Methanopyrus kandleri GN=fen PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.370e-35
Identity = 76/184 (41.30%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MG+  L +L+        +E    +  GR+IAIDA  ++YQFL  + + G  ++ +  G +TSHL G+  RT+ L+E G+KP+YVFDG+PPDLK++ L +R  ++ +A + L     A  KE+ EK++++  ++ +   +D KRLL LMG+P V+APSE EAQCA + + G V+A  S+D DSL
Sbjct:    1 MGLAELRELIEP------EETDLRALAGREIAIDAFNALYQFLTTIMKDGRPLMDSR-GRITSHLNGLLYRTVNLVEEGIKPVYVFDGEPPDLKRETLERRRERKEEAMEKLR---RAKTKEEREKYARQVARLDESLVEDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSL 174          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_THEPD (Flap structure-specific endonuclease OS=Thermofilum pendens (strain Hrk 5) GN=fen PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.257e-34
Identity = 75/160 (46.88%), Postives = 105/160 (65.62%), Query Frame = 3
Query:  132 YFGRK-IAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            +F +K IAIDA  S+YQFL  + +     L +  G VTSHL G+F RTI  +E G+KP+YVFDG+PP+LK++EL +RY  + +A     EA+E G+ E+   ++++T ++T     D K LL+ MGVP VEAPSE EAQ A + K G  +A  S+D DSL
Sbjct:   20 FFSKKVIAIDAYNSLYQFLATIRQKDGTPLLDAQGNVTSHLNGLFYRTINYIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYREAIERGDLEEARIYAQQTSRLTAAMVHDAKLLLRYMGVPYVEAPSEGEAQAAYMVKKGDAWASGSQDFDSL 179          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_IGNH4 (Flap structure-specific endonuclease OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fen PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 76/184 (41.30%), Postives = 112/184 (60.87%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MG+  L +L+     K ++    +S   + +A+DA  ++YQFL  +       L +  G VTSHL G+F RTI +LE G+K  YVFDG PP LK +E+ +R   + +A     EAV  G+ E+  K+++ + K+TK+  ++ KRLL+ MGVP V+APSE EAQ A +   G V+A AS+D DSL
Sbjct:    1 MGVTALRELIPSKCKKTLE---LKSLSNKSVALDAYNTLYQFLAAIRGEDGRPLMDSKGRVTSHLSGLFYRTINMLENGIKVAYVFDGAPPKLKTREIERRQKLKQEAEKKYEEAVRRGDVEEARKYAQMSAKLTKEMVEEAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQDYDSL 181          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_AERPE (Flap structure-specific endonuclease OS=Aeropyrum pernix GN=fen PE=3 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.096e-33
Identity = 69/170 (40.59%), Postives = 106/170 (62.35%), Query Frame = 3
Query:   99 PKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            P+A +E +  +  G  +A+DA   +YQFL  + +     L +  G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+ +R  ++A+A      AVEAG  E+  K++    ++T    ++ K LL  MG+P V+AP+E EAQ A + + G  +A  S+D DSL
Sbjct:   11 PEARREVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLLDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSL 180          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_CENSY (Flap structure-specific endonuclease OS=Cenarchaeum symbiosum GN=fen PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.177e-32
Identity = 70/163 (42.94%), Postives = 101/163 (61.96%), Query Frame = 3
Query:  120 KFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            + ES+  + +AIDA  +IYQFL  +       LT+  G VTSHL G+  R    L  G+KP+YVFDG+PP LK  E+ +R + +  A    A AV+AGN +D  K++++T  +     DD K++LKL G+P ++APSE EA  A L ++G  YA AS+D DS+
Sbjct:   15 RLESFATKVVAIDAYNAIYQFLATIRGPDGMQLTDARGRVTSHLSGLLYRNASFLSMGIKPVYVFDGRPPTLKSAEIERRRNVKKGAAVKYAAAVDAGNMDDARKYAQQTTSMRDGMVDDSKQILKLFGIPYIDAPSEGEATAAYLTQTGDAYASASQDFDSV 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_SULTO (Flap structure-specific endonuclease OS=Sulfolobus tokodaii GN=fen PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.537e-32
Identity = 74/177 (41.81%), Postives = 112/177 (63.28%), Query Frame = 3
Query:   84 LADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            LA+   +  KE  F    G+KI+IDA  ++YQFL  + +     L +  G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R   + +A   L +A   G+    +++K+++ ++++T +  ++ K LLK MG+PVV+APSE EA+ A +   G  +A AS+D DSL
Sbjct:    3 LAELVEEIKKELSFAELKGKKISIDAYNALYQFLAAIRQPDGTPLMDSQGRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTSELKKYAQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSL 179          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_SULSO (Flap structure-specific endonuclease OS=Sulfolobus solfataricus GN=fen PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 69/175 (39.43%), Postives = 108/175 (61.71%), Query Frame = 3
Query:   84 LADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            LAD      +E  F    G++++ID   ++YQFL  + +     L +  G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R   + +A   L  A   G  E++ K+S+  ++++    ++ K+LL+ MG+P+V+APSE EA+ A L K G  +A AS+D D++
Sbjct:    3 LADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAI 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_KORCO (Flap structure-specific endonuclease OS=Korarchaeum cryptofilum (strain OPF8) GN=fen PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 77/185 (41.62%), Postives = 115/185 (62.16%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRT-GTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MG+K + +L+ D       E +     G+KIA+DA  ++YQFL  V +  GT ++T++ GE+TS   G+F RT   L+ G+ PIYVFDG+ P  K + + +R   R +A     EA+E G+ E+  K+++  + +T    +DCK +LKLMGVP+V+APSE EAQ A +   G V+A AS+D DSL
Sbjct:    1 MGVK-IGELIEDKV-----ELELSDIAGKKIALDAFNAMYQFLAKVRQPDGTPLMTSK-GEITSVHSGIFYRTANFLKEGIIPIYVFDGEKPSFKSRAIEERVRAREEAELKWKEALEIGDLEEARKYAQAALNITGDIVEDCKTILKLMGVPIVQAPSEGEAQAAHMAMKGDVWATASQDYDSL 178          
The following BLAST results are available for this feature:
BLAST of FC920893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
FEN_THESM2.072e-3747.59Flap structure-specific endonuclease OS=Thermococc... [more]
FEN_CALMQ3.908e-3644.81Flap structure-specific endonuclease OS=Caldivirga... [more]
FEN_METKA7.370e-3541.30Flap structure-specific endonuclease OS=Methanopyr... [more]
FEN_THEPD1.257e-3446.88Flap structure-specific endonuclease OS=Thermofilu... [more]
FEN_IGNH43.658e-3441.30Flap structure-specific endonuclease OS=Ignicoccus... [more]
FEN_AERPE3.096e-3340.59Flap structure-specific endonuclease OS=Aeropyrum ... [more]
FEN_CENSY1.177e-3242.94Flap structure-specific endonuclease OS=Cenarchaeu... [more]
FEN_SULTO1.537e-3241.81Flap structure-specific endonuclease OS=Sulfolobus... [more]
FEN_SULSO3.424e-3239.43Flap structure-specific endonuclease OS=Sulfolobus... [more]
FEN_KORCO2.219e-3141.62Flap structure-specific endonuclease OS=Korarchaeu... [more]

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Properties
Property NameValue
Genbank descriptionC32014D10EF RVDevelop1 Citrus clementina cDNA clone C32014D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920893 ID=FC920893; Name=FC920893; organism=Citrus clementina; type=EST; length=654bp
TCTCCACATAAACCCTAAACAGAAAGCTTCGTACCCGTTCCCGTTAATTT
TATTAAATGGGTATAAAGGGTTTAACGAAGCTTCTAGCGGACAATGCACC
GAAAGCAATGAAAGAGCAGAAATTTGAGAGCTACTTCGGTCGCAAGATTG
CCATTGATGCTAGCATGAGCATTTACCAGTTTCTCATTGTGGTGGGCAGA
ACTGGGACTGAAATGTTGACTAATGAAGCTGGTGAAGTTACCAGTCATTT
ACAAGGCATGTTTACTCGCACAATCAGGCTCCTTGAAGCAGGAATGAAGC
CAATCTATGTTTTTGATGGGCAGCCTCCGGATTTGAAGAAACAAGAGCTG
GCCAAACGTTATTCGAAGAGGGCTGATGCTACTGATGATTTGGCTGAAGC
TGTGGAGGCTGGCAATAAGGAAGACATTGAGAAATTTAGTAAGCGAACTG
TAAAGGTGACAAAGCAGCACAATGATGACTGCAAAAGACTTCTAAAACTC
ATGGGAGTGCCTGTAGTTGAGGCTCCTTCTGAAGCAGAAGCCCAGTGTGC
TGCTCTTTGCAAATCAGGACAGGTTTATGCTGTGGCTTCTGAAGACATGG
ATTCCCTAACTTTGGTGCTCCTAGATTTCTTCGCCATTTGATGGATCCTA
GCTC
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