FC920893

Overview
NameFC920893
Unique NameFC920893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14210 contig Ccv1_Contig14210:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_STAMF (Flap structure-specific endonuclease OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fen PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.457e-31
Identity = 65/157 (41.40%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  138 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            G+ + ID   ++YQFL  + +     L +  G +TSHL G+F RTI +LE G+KP YVFDG+PP++K +E+ KR   R DA+    EA+  G+ E   +++  + K+T +   D K+LL  MG+P ++AP+E EAQ A +   G  +A AS+D DSL
Sbjct:   25 GKIVVIDGYNALYQFLTAIRQPDGTPLMDSQGRITSHLSGLFYRTINILENGIKPAYVFDGKPPEIKAKEIEKRRKIREDASKKYEEALRKGDIEAARRYAMMSAKLTDEMVQDAKKLLDAMGIPWIQAPAEGEAQAAYIVSKGDAWASASQDYDSL 181          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_METBU (Flap structure-specific endonuclease OS=Methanococcoides burtonii (strain DSM 6242) GN=fen PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.457e-31
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  147 IAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 605
            +AIDA  ++YQFL ++ +     L +  G++TSHL G+  R   L+EAG+KPI+VFDG+PPD K   LAKR+  R  AT    +A   G +E+  K+++ + KVT++  DD  RLL+LMG+P V+APSE EAQ + + + G    + S+D DS
Sbjct:   24 VAIDAYNTLYQFLSIIRQRDGTPLKDSRGQITSHLSGILYRLTSLIEAGVKPIFVFDGKPPDFKSDTLAKRHEVRESATAKWEDAKAQGLEEEAYKYAQASSKVTREMIDDSVRLLELMGIPYVKAPSEGEAQASYMVQKGDADYIGSQDYDS 176          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_NITMS (Flap structure-specific endonuclease OS=Nitrosopumilus maritimus (strain SCM1) GN=fen PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31
Identity = 67/161 (41.61%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  126 ESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            E++  + IAIDA  +IYQFL  +       L++  G +TSHL G+  R +  L  G+KP+YVFDG+PP LK  E+ +R   + DAT    +A+  GN ED  K++++T  +      + K+LL   G+P +EAPSE EA  A L  +GQ YA AS+D DS+
Sbjct:   17 EAFSNKVIAIDAYNAIYQFLASIRGPDGLQLSDSEGRITSHLSGLLYRNVNFLSLGIKPVYVFDGKPPSLKTAEIERRKQIKMDATIKYEKAIADGNMEDARKYAQQTTSMKDGMVKESKQLLTYFGIPYIEAPSEGEATAAHLTNTGQAYASASQDFDSI 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_HYPBU (Flap structure-specific endonuclease OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=fen PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.101e-30
Identity = 66/170 (38.82%), Postives = 107/170 (62.94%), Query Frame = 3
Query:   99 PKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            P+A++E        + +AIDA  ++YQFL  + +     L +  G +TSHL G+F RTI L+E G+K +YVFDG+PP++K  E+ +R   +++A     EAV+ G+ +   ++++   ++T +  +D K+LL  MGVP V+AP+E EAQ A + + G  +A AS+D DSL
Sbjct:   11 PEAIQEIDLAHLKYKVVAIDAYNALYQFLTAIRQPDGTPLMDSKGRITSHLSGLFYRTINLMEHGIKIVYVFDGKPPEMKYLEIERRKRVKSEAVKKYEEAVKKGDTKAARRYAQMAARLTDEMVEDAKKLLDAMGVPWVQAPAEGEAQAAFMARRGDAWAAASQDYDSL 180          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_NANEQ (Flap structure-specific endonuclease OS=Nanoarchaeum equitans GN=fen PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 73/166 (43.98%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  111 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            KE +F+  FG+ IAIDA  ++YQFL  + + G E L +  G +TSHL G+F RTI LLE G+KPIYVFDG PP  K     KR   +        EA++ GN ++  K++K   K+     ++ K+LL+ MG+P V+APSE EA+ A L K G      S+D DSL
Sbjct:   14 KEIEFKQLFGKVIAIDAFNALYQFLFSIRQDG-EPLRDSKGRITSHLSGLFYRTINLLEYGIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAIKYAKSLGKLDSYMVEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYDSL 178          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_METJA (Flap structure-specific endonuclease OS=Methanocaldococcus jannaschii GN=fen PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 69/162 (42.59%), Postives = 100/162 (61.73%), Query Frame = 3
Query:  123 FESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            FE   G+K+AID   ++YQFL  +       L N  GE+TS   G+F +TI LLE  + PI+VFDG+PP LK++    R   +  A   + EA++  + E+  K++KR   +T +  ++CK LL LMG+P VEAPSE EAQ + + K G V+AV S+D D+L
Sbjct:   16 FEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDAL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_ARCFU (Flap structure-specific endonuclease OS=Archaeoglobus fulgidus GN=fen PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 65/166 (39.16%), Postives = 105/166 (63.25%), Query Frame = 3
Query:  111 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            +E + E + G+KIA+DA  ++YQF+ ++ +     L +  G +TSHL G+  R   ++E G++P++VFDG+PP+ KK E+ +R  +RA+A +    A++AG+K D +K+++   +V +   D  K LL  MG+P V+APSE EAQ A +   G V    S+D DSL
Sbjct:   12 EEVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDK-DAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSL 176          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_META3 (Flap structure-specific endonuclease OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fen PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.590e-29
Identity = 71/173 (41.04%), Postives = 101/173 (58.38%), Query Frame = 3
Query:   90 DNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            D+ PK  K         + +AID+   IYQFL  +       L N  GE+TS   G+F +TI LL   + PI+VFDG+PP+LK +   +R   +  A+ D   A    N ED++K++KR   +     D+CK+LLKLMG+P ++APSE EAQCA + K+G  Y V S+D D+L
Sbjct:    7 DSIPK--KNISITDLKNKTVAIDSMNIIYQFLSSIRLRDGAPLRNSKGEITSPYNGIFYKTIYLLNNEITPIWVFDGKPPELKLKTREERRKVKEKASKDYEIAKREENIEDMQKYAKRINYLEPNTVDNCKKLLKLMGIPYIDAPSEGEAQCAHMIKNGDAYCVVSQDYDAL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_SULAC (Flap structure-specific endonuclease OS=Sulfolobus acidocaldarius GN=fen PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 63/157 (40.13%), Postives = 101/157 (64.33%), Query Frame = 3
Query:  138 GRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            G+KI+IDA  +IYQFL  + +     L +  G +TSHL G+F RTI ++E+G+ PI+VFDG+PP+ K +E+ +R   + +A   L +A   G   +I K+++  V+++ +  ++ K+LL  MG+PVV+AP E EA+ A +      +A AS+D DSL
Sbjct:   21 GKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLFYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRKYAQAAVRLSNEMVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_METPE (Flap structure-specific endonuclease OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fen PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 65/153 (42.48%), Postives = 96/153 (62.75%), Query Frame = 3
Query:  150 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            AID + ++YQFL ++ +     L N  G +TSHL G+F RT+R LE G++P+Y+FDG+PP LK++ +  R   R +A      A+  G++E+  K ++ + +VT +     K LL LMGVP V+APSE EAQ A++  SG V    S+D DSL
Sbjct:   26 AIDGNNALYQFLSIIRQPDGTPLMNSEGRITSHLSGVFFRTLRFLEKGIRPVYIFDGKPPALKQETIESRREVRREAGVQWEAALARGDQEEAYKQARASSRVTPEIIATSKELLTLMGVPCVQAPSEGEAQAASMAASGAVTYAVSQDYDSL 178          
The following BLAST results are available for this feature:
BLAST of FC920893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
FEN_STAMF6.457e-3141.40Flap structure-specific endonuclease OS=Staphyloth... [more]
FEN_METBU6.457e-3143.79Flap structure-specific endonuclease OS=Methanococ... [more]
FEN_NITMS8.432e-3141.61Flap structure-specific endonuclease OS=Nitrosopum... [more]
FEN_HYPBU1.101e-3038.82Flap structure-specific endonuclease OS=Hypertherm... [more]
FEN_NANEQ1.879e-3043.98Flap structure-specific endonuclease OS=Nanoarchae... [more]
FEN_METJA1.879e-3042.59Flap structure-specific endonuclease OS=Methanocal... [more]
FEN_ARCFU1.879e-3039.16Flap structure-specific endonuclease OS=Archaeoglo... [more]
FEN_META31.590e-2941.04Flap structure-specific endonuclease OS=Methanococ... [more]
FEN_SULAC3.543e-2940.13Flap structure-specific endonuclease OS=Sulfolobus... [more]
FEN_METPE6.043e-2942.48Flap structure-specific endonuclease OS=Methanosph... [more]

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Properties
Property NameValue
Genbank descriptionC32014D10EF RVDevelop1 Citrus clementina cDNA clone C32014D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920893 ID=FC920893; Name=FC920893; organism=Citrus clementina; type=EST; length=654bp
TCTCCACATAAACCCTAAACAGAAAGCTTCGTACCCGTTCCCGTTAATTT
TATTAAATGGGTATAAAGGGTTTAACGAAGCTTCTAGCGGACAATGCACC
GAAAGCAATGAAAGAGCAGAAATTTGAGAGCTACTTCGGTCGCAAGATTG
CCATTGATGCTAGCATGAGCATTTACCAGTTTCTCATTGTGGTGGGCAGA
ACTGGGACTGAAATGTTGACTAATGAAGCTGGTGAAGTTACCAGTCATTT
ACAAGGCATGTTTACTCGCACAATCAGGCTCCTTGAAGCAGGAATGAAGC
CAATCTATGTTTTTGATGGGCAGCCTCCGGATTTGAAGAAACAAGAGCTG
GCCAAACGTTATTCGAAGAGGGCTGATGCTACTGATGATTTGGCTGAAGC
TGTGGAGGCTGGCAATAAGGAAGACATTGAGAAATTTAGTAAGCGAACTG
TAAAGGTGACAAAGCAGCACAATGATGACTGCAAAAGACTTCTAAAACTC
ATGGGAGTGCCTGTAGTTGAGGCTCCTTCTGAAGCAGAAGCCCAGTGTGC
TGCTCTTTGCAAATCAGGACAGGTTTATGCTGTGGCTTCTGAAGACATGG
ATTCCCTAACTTTGGTGCTCCTAGATTTCTTCGCCATTTGATGGATCCTA
GCTC
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