FC920893

Overview
NameFC920893
Unique NameFC920893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14210 contig Ccv1_Contig14210:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_THEAC (Flap structure-specific endonuclease OS=Thermoplasma acidophilum GN=fen PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 66/165 (40.00%), Postives = 95/165 (57.58%), Query Frame = 3
Query:  114 EQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            E   +    +  +ID    +YQ L  V +     L +  G VTSHL G+F RTI LLE  ++P+YVFDG+P  LK + +++R   +  A  +L EA+E G +ED+ ++  R   +T Q  DD K+LL  MG+P V+APSE EAQ + + K   V  V S+D D L
Sbjct:   13 ETSLKDQGNQTFSIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENRIRPVYVFDGKPSPLKNRTISERQMMKEKAKAELEEAIERG-EEDLRQYYSRINYITPQIVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKK-NVDGVISQDYDCL 175          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PICTO (Flap structure-specific endonuclease OS=Picrophilus torridus GN=fen PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 65/165 (39.39%), Postives = 90/165 (54.55%), Query Frame = 3
Query:  114 EQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            E   +   G  +++DA   IYQFL  +     E L +  G +TSHL G+F RT  LLE  +KP+YVFDG+P  LK + L +R   +      L EA+ + +   I   S R   +T    ++ K LL LMG+P V+APSE EAQ + +   G V AV S+D D L
Sbjct:   13 ETSLKDNSGSIVSVDAYNIIYQFLSSIRGDDGEPLKDSNGNITSHLSGIFYRTSNLLENNIKPVYVFDGKPFHLKSETLRERSLIKEKNIMKLEEAIASNDDAKIRSLSSRINYITDDIVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDVNAVVSQDYDCL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_METLZ (Flap structure-specific endonuclease OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=fen PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.304e-23
Identity = 66/184 (35.87%), Postives = 98/184 (53.26%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MG+  L  LLA+      KE       G   A+DA  ++YQFL  + +     L +  G +TSHL G+  R   L+E  + PIYVFDG+PP  K   L+KR   R +A D   +A++ G++E   K++  + K+     D  K LL  +G+  ++AP E EAQ + + K+G V    S+D DSL
Sbjct:    1 MGV-ALRPLLAE-----YKESPGWDGLGGIAAVDAFNALYQFLSGIRQADGAPLMDGQGRITSHLSGLLFRNANLIEKNITPIYVFDGKPPVFKASTLSKRREVRENAADAWEKALKEGDEESARKYAMASSKIDAFIIDSSKELLSALGIAWIQAPEEGEAQSSFMTKNGDVTYAVSQDYDSL 178          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_THEVO (Flap structure-specific endonuclease OS=Thermoplasma volcanium GN=fen PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.459e-22
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  150 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            AID    +YQ L  V +     L + +G VTSHL G+F RT+ L+E G+KPI+VFDG+P  LK + L  R   +  A  +L EA+  G +E+++++  R   +T Q  +D K LL  MG+P V+APSE EAQ + + +      V S+D D L
Sbjct:   25 AIDTYNILYQLLSNVRQYDGTPLMDSSGNVTSHLYGIFYRTVNLVENGIKPIFVFDGKPSPLKNRTLEIRQLAKEKAKAELEEAISRG-EENLKQYYSRINYITPQIVNDTKELLTYMGIPYVDAPSEGEAQASYMTRK-DADGVISQDYDCL 175          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_METHJ (Flap structure-specific endonuclease OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=fen PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.195e-22
Identity = 51/153 (33.33%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  150 AIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            AIDA  ++YQFL ++ +     L +++G +TSHL G+F RT   L  G++P+++FDG+ P++K + + +R   R ++ +   +A + G+     +++  +  +        ++L++LMG+PVV+APSE EAQ A +   G    V S+D D+L
Sbjct:   26 AIDAFNALYQFLSIIRQPDGTPLMDDSGRITSHLSGIFFRTANFLTQGIRPVFIFDGKSPEMKGRTIQERRDVREESKEKWDQAKKEGDLAGAFRYAMSSTAIDAYILSSARQLIQLMGLPVVDAPSEGEAQGAYMVLKGDADYVVSQDYDTL 178          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_HALMA (Flap structure-specific endonuclease OS=Haloarcula marismortui GN=fen PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 56/169 (33.14%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  105 AMKEQKFESYFGRKIAIDASMSIYQFLIVVGR-TGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            A+ +  F+   G  +A+DA   +Y++L    + T     T   GE  ++L G+     +  E  M P++VFDG   DLK  E+ KR  +R     +L  A EAG+   + K   RT ++T    D  + LL+L+ VP+V+AP+E E Q + + + G V  V +ED D+L
Sbjct:   11 ALSDVSFDDLGGSVVAVDAHNWLYRYLTTTVKFTSESKYTTSNGEEVANLIGVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEAAREAGDSTRVAKLDSRTQRLTDTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVDYVGTEDYDAL 179          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: YL386_MIMIV (Putative endonuclease L386 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L386 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 68/215 (31.63%), Postives = 100/215 (46.51%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKE-----------------------QKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----KSGQVY--AVASEDMDSLTL 614
            MGIKGL KLL +   +  KE                        +F    G  +AIDAS++IY+ +    ++G   L N  G++TSHL+G+F   +  L+  + PIYVFDG+ PD+K + + KR                        K  K   K+T +   + + LL LMG+P + AP EA+  C+ LC     +G+ Y   V +ED D L L
Sbjct:    1 MGIKGLFKLLREKIKEEEKEGLKRKELGIPDDDTKIKYKPLTVYRFRRLKGITVAIDASLAIYRMVYGKLKSGPS-LVNREGKLTSHLRGIFYNVLTFLQNDIIPIYVFDGKAPDIKSKTIEKR------------------------KLRKDRFKLTSEDIKEVQILLDLMGIPYIIAPGEADVICSWLCARHDSNGKRYVKGVCTEDSDMLPL 190          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_HALWD (Flap structure-specific endonuclease OS=Haloquadratum walsbyi (strain DSM 16790) GN=fen PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 54/169 (31.95%), Postives = 91/169 (53.85%), Query Frame = 3
Query:  105 AMKEQKFESYFGRKIAIDASMSIYQFLIVVGR-TGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            A++   F+   G  IA+DA   +Y++L    + T     T E+G   ++L G+     +  E  + P++VFDG   +LK +E+ +R   R +A +  A A E G++    +   RT ++T+  ++  + LL  + VP++EAP+E EAQ A +   G V  V SED D+L
Sbjct:   11 ALESVAFDDISGSVIAVDAHNWLYRYLTTTVKFTSDAAYTTESGVEVANLIGVVQGLPKFFEHDLTPVFVFDGGVTELKDEEVQERRVAREEAVELQAAAEERGDELAASRLEARTQRLTETIHETTRGLLNRLDVPIIEAPAEGEAQAAEMAIRGDVDYVGSEDYDTL 179          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_HALSA (Flap structure-specific endonuclease OS=Halobacterium salinarium GN=fen PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 54/172 (31.40%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  105 AMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA-SEDMDSLTL 614
            A++E  F    G  +A+DA   +Y++L   V  TG ++ T   G   ++L G      +  E G+ P++V+DG   +LK  E+A R  +R    + L +A EAG+  +  +   RT ++T   ++  + L  L+ +P VEAP+E EAQ A + ++      A S+D D L L
Sbjct:   11 AIEETPFADLEGSVVAVDAHNWLYKYLTTTVQWTGADVYTTSDGTEVANLVGAVQGLPKFFEHGLTPVFVWDGGVTELKDDEIADRREQRERYEEQLDDAREAGDAAEAARLDARTQRLTPTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDDAVDYAGSDDYDCLLL 182          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_HALS3 (Flap structure-specific endonuclease OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fen PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 54/172 (31.40%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  105 AMKEQKFESYFGRKIAIDASMSIYQFLIV-VGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA-SEDMDSLTL 614
            A++E  F    G  +A+DA   +Y++L   V  TG ++ T   G   ++L G      +  E G+ P++V+DG   +LK  E+A R  +R    + L +A EAG+  +  +   RT ++T   ++  + L  L+ +P VEAP+E EAQ A + ++      A S+D D L L
Sbjct:   11 AIEETPFADLEGSVVAVDAHNWLYKYLTTTVQWTGADVYTTSDGTEVANLVGAVQGLPKFFEHGLTPVFVWDGGVTELKDDEIADRREQRERYEEQLDDAREAGDAAEAARLDARTQRLTPTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDDAVDYAGSDDYDCLLL 182          
The following BLAST results are available for this feature:
BLAST of FC920893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
FEN_THEAC2.012e-2440.00Flap structure-specific endonuclease OS=Thermoplas... [more]
FEN_PICTO2.012e-2439.39Flap structure-specific endonuclease OS=Picrophilu... [more]
FEN_METLZ1.304e-2335.87Flap structure-specific endonuclease OS=Methanocor... [more]
FEN_THEVO2.459e-2240.52Flap structure-specific endonuclease OS=Thermoplas... [more]
FEN_METHJ4.195e-2233.33Flap structure-specific endonuclease OS=Methanospi... [more]
FEN_HALMA1.762e-2033.14Flap structure-specific endonuclease OS=Haloarcula... [more]
YL386_MIMIV3.675e-1831.63Putative endonuclease L386 OS=Acanthamoeba polypha... [more]
FEN_HALWD3.675e-1831.95Flap structure-specific endonuclease OS=Haloquadra... [more]
FEN_HALSA3.111e-1731.40Flap structure-specific endonuclease OS=Halobacter... [more]
FEN_HALS33.111e-1731.40Flap structure-specific endonuclease OS=Halobacter... [more]

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Properties
Property NameValue
Genbank descriptionC32014D10EF RVDevelop1 Citrus clementina cDNA clone C32014D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920893 ID=FC920893; Name=FC920893; organism=Citrus clementina; type=EST; length=654bp
TCTCCACATAAACCCTAAACAGAAAGCTTCGTACCCGTTCCCGTTAATTT
TATTAAATGGGTATAAAGGGTTTAACGAAGCTTCTAGCGGACAATGCACC
GAAAGCAATGAAAGAGCAGAAATTTGAGAGCTACTTCGGTCGCAAGATTG
CCATTGATGCTAGCATGAGCATTTACCAGTTTCTCATTGTGGTGGGCAGA
ACTGGGACTGAAATGTTGACTAATGAAGCTGGTGAAGTTACCAGTCATTT
ACAAGGCATGTTTACTCGCACAATCAGGCTCCTTGAAGCAGGAATGAAGC
CAATCTATGTTTTTGATGGGCAGCCTCCGGATTTGAAGAAACAAGAGCTG
GCCAAACGTTATTCGAAGAGGGCTGATGCTACTGATGATTTGGCTGAAGC
TGTGGAGGCTGGCAATAAGGAAGACATTGAGAAATTTAGTAAGCGAACTG
TAAAGGTGACAAAGCAGCACAATGATGACTGCAAAAGACTTCTAAAACTC
ATGGGAGTGCCTGTAGTTGAGGCTCCTTCTGAAGCAGAAGCCCAGTGTGC
TGCTCTTTGCAAATCAGGACAGGTTTATGCTGTGGCTTCTGAAGACATGG
ATTCCCTAACTTTGGTGCTCCTAGATTTCTTCGCCATTTGATGGATCCTA
GCTC
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