FC920895

Overview
NameFC920895
Unique NameFC920895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI193_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica GN=DI19-3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.232e-14
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  227 MDADSWSARLSSASKRYQSALQSRSEMF-MGFEEIDGD--DD-----------LRE----EFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQRK 535
            MD++ W + L++A + Y + L    +M  +G EE++ +  DD           L E    +  CP+C E  DI  LC H++++HP E     CP+C  ++  DM+ HIT+QHG +FK  R+
Sbjct:    1 MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWPDVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFKSGRR 121          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI196_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp. japonica GN=DI19-6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.217e-11
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 2
Query:  308 FMGFEEIDGDDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQR 532
            F  + EI GDD+  E  PCPFC    ++  LC H+ +EH  + KN VCP+CA  +  D   H  +QH ++ K ++
Sbjct:   21 FQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNLDKDTDEHFRVQHSHLLKRRK 95          
BLAST of FC920895 vs. ExPASy Swiss-Prot
Match: DI195_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp. japonica GN=DI19-5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.449e-11
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  335 DDDLREEFPCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQR 532
            + +L E FPCPFC    ++  +C H+ +EH  + +N VCP+CA  +G DM AH  +QH ++ K ++
Sbjct:   30 EGELWEYFPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLKRRK 95          
The following BLAST results are available for this feature:
BLAST of FC920895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DI193_ORYSJ6.232e-1433.88Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza ... [more]
DI196_ORYSJ2.217e-1138.67Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza ... [more]
DI195_ORYSJ6.449e-1139.39Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionC32014E01EF RVDevelop1 Citrus clementina cDNA clone C32014E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920895 ID=FC920895; Name=FC920895; organism=Citrus clementina; type=EST; length=537bp
AAATACCAGCACAACACCAGATAACATTTCTTCTTTCTCTTTCCCTCCCA
AACCGACCCGCCCGTCATTGATTTTCTCTCTCTATCTCTCTCTCCATCGA
ATAAATTTCTGGGTTTTGATCAAGATTGGAACTTGTATTTGAATTCAAGA
TCAAAGCTTTGAAAACCCCTTAAAAATTGTTCCCATTTTTTGTCCAAGCT
TAAAAAGGAGCTTCTTATACATAAATATGGATGCTGATTCATGGAGTGCC
CGTCTCTCATCAGCTTCAAAGAGATACCAATCGGCTCTGCAATCACGATC
TGAGATGTTCATGGGGTTTGAAGAAATTGATGGAGATGATGATCTAAGGG
AGGAATTTCCATGCCCATTCTGCTCGGAGTATTTTGATATTGTTGGCTTG
TGCTGCCACATAGATGATGAGCATCCTGTGGAGGCAAAGAATGGGGTTTG
TCCAGTTTGTGCAATGAGGGTGGGGGTGGATATGGTTGCCCACATAACCT
TGCAACATGGAAATATATTTAAGATGCAGCGCAAGAG
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