FC920896

Overview
NameFC920896
Unique NameFC920896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10358 contig Ccv1_Contig10358:12..423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP19_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  253 LMDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            +M+  VLDDIIRRLL+ K G   KQVQL+E EIRQLC  +++IFLSQPNLLEL
Sbjct:    8 MMEMGVLDDIIRRLLEGKGG---KQVQLSEVEIRQLCVNARQIFLSQPNLLEL 57          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP14_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            +D  VLDDIIRRL + +  R  KQVQL+EAEI+QLC  +++IFL QPNLLEL
Sbjct:   14 IDSAVLDDIIRRLTEVRLARPGKQVQLSEAEIKQLCTTARDIFLQQPNLLEL 65          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP12_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana GN=TOPP2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRT-TKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            MD   LDDIIRRLLD +N +  TKQ  L E+EIRQLC  S+EIFL QPNLLEL
Sbjct:    9 MDPAALDDIIRRLLDYRNPKPGTKQAMLNESEIRQLCIVSREIFLQQPNLLEL 61          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP1_PHAVU (Serine/threonine-protein phosphatase PP1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            MD+ VLDD+IRRLL+ K G   KQVQL+E+EIRQLC  +++IFLSQP LLEL
Sbjct:    1 MDKAVLDDVIRRLLEGKGG---KQVQLSESEIRQLCVHARQIFLSQPILLEL 49          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP18_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 8 OS=Arabidopsis thaliana GN=TOPP8 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  253 LMDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            ++++ VLDDIIRRLL+ K G   KQVQL+E+EIRQLC  +++IFLSQPNLL+L
Sbjct:    8 MVEKGVLDDIIRRLLEGKGG---KQVQLSESEIRQLCFNARQIFLSQPNLLDL 57          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP15_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 5 OS=Arabidopsis thaliana GN=TOPP5 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRT-TKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            MD  VLDDIIRRLLD +N +  TKQ  L ++EIRQLC  S+EIFL QP LLEL
Sbjct:    9 MDPAVLDDIIRRLLDYRNPKAGTKQAMLNDSEIRQLCFVSREIFLQQPCLLEL 61          
The following BLAST results are available for this feature:
BLAST of FC920896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PP19_ARATH8.857e-1267.92Serine/threonine-protein phosphatase PP1 isozyme 9... [more]
PP14_ARATH8.857e-1263.46Serine/threonine-protein phosphatase PP1 isozyme 4... [more]
PP12_ARATH8.857e-1267.92Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP1_PHAVU1.511e-1167.31Serine/threonine-protein phosphatase PP1 OS=Phaseo... [more]
PP18_ARATH3.366e-1164.15Serine/threonine-protein phosphatase PP1 isozyme 8... [more]
PP15_ARATH7.498e-1166.04Serine/threonine-protein phosphatase PP1 isozyme 5... [more]

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Properties
Property NameValue
Genbank descriptionC32014E02EF RVDevelop1 Citrus clementina cDNA clone C32014E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920896 ID=FC920896; Name=FC920896; organism=Citrus clementina; type=EST; length=412bp
ATCATTCATCTCACCTATGACCTATATCCTCTTTAACTCCGCCAACTTCA
TCCACCGAGCGGGAAATGGCCGCCAACGATTCTCTCAATAATATGCCAAA
CTCCCCTTTCTCCGTCAACGGAATCTGTTGAATCCGAGACTCAACAAATC
TAATACTCGGTTTTATAACACCGTCAGTATCTGATTTTATTCTTATTTTA
GAAACATAAATTTCTAGGGTTTGTTTTATTTCGATATAAGTATTTGTGTT
TTTTGATGGACGAGACTGTGCTTGATGATATAATACGACGGCTCCTTGAT
GCGAAGAATGGGAGGACGACGAAGCAGGTGCAGCTCACGGAGGCTGAAAT
ACGGCAGCTTTGTGCTGCGTCCAAGGAGATATTCCTTAGCCAGCCTAATC
TTCTCGAGCTTG
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