FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.605e-31 Identity = 76/194 (39.18%), Postives = 106/194 (54.64%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 PG+GP L++ P+RELA Q + +F + R +R GG Q+ + RGV IV+ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P ++QN AR L P+ V +G A I +V EY K++ + +L + VLIF + Sbjct: 167 PGDGPVVLVLAPTRELAVQIQQECSKFGSSSR------IRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQNLARDYLQDPIQVRIGSLELAASHTITQVVEVISEYEKRDRLVKHLETATTEKESKVLIFASTK 354 HSP 2 Score: 24.2534 bits (51), Expect = 2.605e-31 Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAI 726 A+A+HG K Q ER++ + Sbjct: 371 ALAIHGDKQQSERDWVL 387
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.558e-31 Identity = 81/220 (36.82%), Postives = 126/220 (57.27%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716 P L++ P+REL Q +E +F A +R + GG D+ SQ+ + RG ++ ATPGRL D++ + K++L N +YL LDEADR++D+GFE IR + D +RQTL+FSAT P +IQN ARS L + + + VGR G+ + ++ Q VEYV + K LL+ L +++ +L+F E + M T + + + +R+ RER Sbjct: 248 PTALVLAPTRELVSQIHEEARKF------AYRSWVRPAVVYGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQRER 461
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 4.395e-31 Identity = 76/174 (43.68%), Postives = 98/174 (56.32%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA-KIVYLLECL 587 EGP +I P+RELA Q + ++F LR GG+ Q + +K G IVVATPGRL DML K + + YL LDEADR+ DLGFE +R + + RQTLLFSATMP K++ AR L P+ V VG G AN D+ Q V + +A K+ +LLE L Sbjct: 300 EGPIGVICAPTRELAHQIFLEAKKFSKAY------GLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKL 467 HSP 2 Score: 22.7126 bits (47), Expect = 4.395e-31 Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = 1 Query: 658 TLERIEAVAVHGGKDQEER 714 TL + A+HG KDQ R Sbjct: 494 TLNSFKVAALHGDKDQASR 512
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3_XENLA (Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.070e-31 Identity = 76/191 (39.79%), Postives = 115/191 (60.21%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629 P L++ P+RELA Q YE +F R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K RQT++FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T L+F E + Sbjct: 308 PLSLVLAPTRELAVQIYEEARKFAYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETK 492
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 7.486e-31 Identity = 75/194 (38.66%), Postives = 107/194 (55.15%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR---AGAANLDVIQEV--EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 PG+GP L++ P+RELA Q + +F R +R GGV Q+ + RG IV+ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P ++Q AR L P+ V +G A + N+ + EV E+ K++ + +L Q +LIF + Sbjct: 180 PGDGPIVLVLAPTRELAVQIQKECSKFGKSSR------IRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVKHLDTASQDKESKILIFASTK 367 HSP 2 Score: 26.9498 bits (58), Expect = 7.486e-31 Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+A+HG KDQ ER++ ++ Sbjct: 384 ALAIHGDKDQRERDWVLN 401
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.927e-31 Identity = 75/191 (39.27%), Postives = 115/191 (60.21%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629 P L++ P+RELA Q YE +F R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T +L+F E + Sbjct: 266 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETK 450
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 9.666e-31 Identity = 73/177 (41.24%), Postives = 101/177 (57.06%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDML---AKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 GEGP +I+ P+RELA Q + + FL + ++R GG ++ Q+ +KRG IVV TPGR+ D+L A + NL C YL LDEADR+ DLGFE + + ++ + RQT+LFSAT P ++ AR L KPV + VG +V Q VE +E+K LLE L Sbjct: 489 GEGPIAIIMTPTRELAVQIFRECKPFLKLL------NIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELL 659 HSP 2 Score: 25.7942 bits (55), Expect = 9.666e-31 Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 1 Query: 682 AVHGGKDQEEREYAIS 729 ++HGGKDQ +R+ IS Sbjct: 697 SIHGGKDQHDRDSTIS 712
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 1.266e-30 Identity = 75/191 (39.27%), Postives = 113/191 (59.16%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629 P L++ P+RELA Q YE +F R +R + GG D Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T L+F E + Sbjct: 266 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETK 450 HSP 2 Score: 23.483 bits (49), Expect = 1.266e-30 Identity = 8/21 (38.10%), Postives = 14/21 (66.67%), Query Frame = 1 Query: 664 ERIEAVAVHGGKDQEEREYAI 726 ER ++HG + Q++RE A+ Sbjct: 463 ERYACTSIHGDRSQKDREEAL 483
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3X_HUMAN (ATP-dependent RNA helicase DDX3X OS=Homo sapiens GN=DDX3X PE=1 SV=3) HSP 1 Score: 133.265 bits (334), Expect = 1.352e-30 Identity = 75/191 (39.27%), Postives = 114/191 (59.69%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629 P L++ P+RELA Q YE +F R +R + GG D+ Q+ ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE IR + + K R T++FSAT P +IQ AR L + + + VGR G+ + ++ Q+V +V++ K +LL+ L T L+F E + Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 451
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX23_HUMAN (Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3) HSP 1 Score: 124.02 bits (310), Expect = 2.786e-30 Identity = 73/214 (34.11%), Postives = 113/214 (52.80%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ--------------------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL-QKTPPPVLIFCENR 629 +GP+ +I+ P+RELA+Q E +F P+ +RT+ IGG+ Q ++ G IV+ATPGRL D+L + + L C Y+ LDEADR++D+GFE D++++ +H RQT++F+ATMP ++ ARS L +P V +G AG + V Q+V + + K LL L Q PP++IF + Sbjct: 467 QGPYAIILAPTRELAQQIEEETIKFGKPL------GIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQK 674 HSP 2 Score: 29.261 bits (64), Expect = 2.786e-30 Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAISS 732 A +HGGK QE+RE+A+S+ Sbjct: 691 ACTLHGGKGQEQREFALSN 709 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |