FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.605e-31
Identity = 76/194 (39.18%), Postives = 106/194 (54.64%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            PG+GP  L++ P+RELA Q  +   +F +  R      +R     GG     Q+  + RGV IV+ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P ++QN AR  L  P+ V +G    A    I +V     EY K++  + +L     +    VLIF   +
Sbjct:  167 PGDGPVVLVLAPTRELAVQIQQECSKFGSSSR------IRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQNLARDYLQDPIQVRIGSLELAASHTITQVVEVISEYEKRDRLVKHLETATTEKESKVLIFASTK 354          

HSP 2 Score: 24.2534 bits (51), Expect = 2.605e-31
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+A+HG K Q ER++ +
Sbjct:  371 ALAIHGDKQQSERDWVL 387          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.558e-31
Identity = 81/220 (36.82%), Postives = 126/220 (57.27%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  L++ P+REL  Q +E   +F      A    +R  +  GG D+ SQ+  + RG  ++ ATPGRL D++ + K++L N +YL LDEADR++D+GFE  IR + D        +RQTL+FSAT P +IQN ARS L + + + VGR G+ + ++ Q VEYV  + K   LL+ L  +++   +L+F E + M  T  +    +   +     +R+ RER
Sbjct:  248 PTALVLAPTRELVSQIHEEARKF------AYRSWVRPAVVYGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQRER 461          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 4.395e-31
Identity = 76/174 (43.68%), Postives = 98/174 (56.32%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA-KIVYLLECL 587
            EGP  +I  P+RELA Q +   ++F           LR     GG+    Q + +K G  IVVATPGRL DML  K + +    YL LDEADR+ DLGFE  +R +    +  RQTLLFSATMP K++  AR  L  P+ V VG  G AN D+ Q V  +  +A K+ +LLE L
Sbjct:  300 EGPIGVICAPTRELAHQIFLEAKKFSKAY------GLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKL 467          

HSP 2 Score: 22.7126 bits (47), Expect = 4.395e-31
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = 1
Query:  658 TLERIEAVAVHGGKDQEER 714
            TL   +  A+HG KDQ  R
Sbjct:  494 TLNSFKVAALHGDKDQASR 512          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3_XENLA (Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.070e-31
Identity = 76/191 (39.79%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629
            P  L++ P+RELA Q YE   +F    R      +R  +  GG D+  Q+  ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE  IR + +      K  RQT++FSAT P +IQ  AR  L + + + VGR G+ + ++ Q+V +V++  K  +LL+ L  T      L+F E +
Sbjct:  308 PLSLVLAPTRELAVQIYEEARKFAYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETK 492          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.486e-31
Identity = 75/194 (38.66%), Postives = 107/194 (55.15%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR---AGAANLDVIQEV--EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            PG+GP  L++ P+RELA Q  +   +F    R      +R     GGV    Q+  + RG  IV+ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P ++Q  AR  L  P+ V +G    A + N+  + EV  E+ K++  + +L    Q     +LIF   +
Sbjct:  180 PGDGPIVLVLAPTRELAVQIQKECSKFGKSSR------IRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVKHLDTASQDKESKILIFASTK 367          

HSP 2 Score: 26.9498 bits (58), Expect = 7.486e-31
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+A+HG KDQ ER++ ++
Sbjct:  384 ALAIHGDKDQRERDWVLN 401          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.927e-31
Identity = 75/191 (39.27%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629
            P  L++ P+RELA Q YE   +F    R      +R  +  GG D+  Q+  ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE  IR + +      K  R T++FSAT P +IQ  AR  L + + + VGR G+ + ++ Q+V +V++  K  +LL+ L  T     +L+F E +
Sbjct:  266 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETK 450          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.666e-31
Identity = 73/177 (41.24%), Postives = 101/177 (57.06%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDML---AKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            GEGP  +I+ P+RELA Q +   + FL  +      ++R     GG  ++ Q+  +KRG  IVV TPGR+ D+L   A +  NL  C YL LDEADR+ DLGFE  +  + ++ +  RQT+LFSAT P  ++  AR  L KPV + VG       +V Q VE   +E+K   LLE L
Sbjct:  489 GEGPIAIIMTPTRELAVQIFRECKPFLKLL------NIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELL 659          

HSP 2 Score: 25.7942 bits (55), Expect = 9.666e-31
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  682 AVHGGKDQEEREYAIS 729
            ++HGGKDQ +R+  IS
Sbjct:  697 SIHGGKDQHDRDSTIS 712          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.266e-30
Identity = 75/191 (39.27%), Postives = 113/191 (59.16%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629
            P  L++ P+RELA Q YE   +F    R      +R  +  GG D   Q+  ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE  IR + +      K  R T++FSAT P +IQ  AR  L + + + VGR G+ + ++ Q+V +V++  K  +LL+ L  T      L+F E +
Sbjct:  266 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETK 450          

HSP 2 Score: 23.483 bits (49), Expect = 1.266e-30
Identity = 8/21 (38.10%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            ER    ++HG + Q++RE A+
Sbjct:  463 ERYACTSIHGDRSQKDREEAL 483          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3X_HUMAN (ATP-dependent RNA helicase DDX3X OS=Homo sapiens GN=DDX3X PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.352e-30
Identity = 75/191 (39.27%), Postives = 114/191 (59.69%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629
            P  L++ P+RELA Q YE   +F    R      +R  +  GG D+  Q+  ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE  IR + +      K  R T++FSAT P +IQ  AR  L + + + VGR G+ + ++ Q+V +V++  K  +LL+ L  T      L+F E +
Sbjct:  267 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 451          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX23_HUMAN (Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 2.786e-30
Identity = 73/214 (34.11%), Postives = 113/214 (52.80%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ--------------------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL-QKTPPPVLIFCENR 629
            +GP+ +I+ P+RELA+Q  E   +F  P+       +RT+  IGG+    Q   ++ G  IV+ATPGRL D+L  + + L  C Y+ LDEADR++D+GFE D++++ +H                              RQT++F+ATMP  ++  ARS L +P  V +G AG  +  V Q+V  + +  K   LL  L Q   PP++IF   +
Sbjct:  467 QGPYAIILAPTRELAQQIEEETIKFGKPL------GIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQK 674          

HSP 2 Score: 29.261 bits (64), Expect = 2.786e-30
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A  +HGGK QE+RE+A+S+
Sbjct:  691 ACTLHGGKGQEQREFALSN 709          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_PICST2.605e-3139.18ATP-dependent RNA helicase DBP2 OS=Pichia stipitis... [more]
DED1_CRYNE3.558e-3136.82ATP-dependent RNA helicase ded1 OS=Cryptococcus ne... [more]
RH24_ARATH4.395e-3143.68DEAD-box ATP-dependent RNA helicase 24 OS=Arabidop... [more]
DDX3_XENLA6.070e-3139.79Putative ATP-dependent RNA helicase an3 OS=Xenopus... [more]
DBP2_CANGA7.486e-3138.66ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]
DDX3L_MOUSE7.927e-3139.27Putative ATP-dependent RNA helicase Pl10 OS=Mus mu... [more]
PRP11_SCHPO9.666e-3141.24Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DDX3Y_MOUSE1.266e-3039.27ATP-dependent RNA helicase DDX3Y OS=Mus musculus G... [more]
DDX3X_HUMAN1.352e-3039.27ATP-dependent RNA helicase DDX3X OS=Homo sapiens G... [more]
DDX23_HUMAN2.786e-3034.11Probable ATP-dependent RNA helicase DDX23 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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