FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 9.278e-28
Identity = 65/175 (37.14%), Postives = 106/175 (60.57%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            P  +I+ P+RELA Q ++  ++F      +    ++ ++  GG  +  QL  ++RGV I+VATPGRL D+L + ++++   R+L LDEADR++D+GFE  IR++ +      +  RQTLLFSAT P +IQ  A   L   + + VGR G++   ++Q VE+V    K  +L++ L
Sbjct:  238 PLAVILSPTRELASQIHDEAKKF------SYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLL 406          

HSP 2 Score: 23.8682 bits (50), Expect = 9.278e-28
Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A ++HG + Q+ERE A+ +
Sbjct:  445 ATSIHGDRTQQEREVALKA 463          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_TRYBB (Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma brucei brucei GN=HEL64 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.294e-28
Identity = 71/188 (37.77%), Postives = 108/188 (57.45%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCE 623
            G+GP  +++ P+RELA+Q  E  ++ +         D+      GG     QL +++RGVHI+VATPGRL D L  K++NL    YL LDEADR++D+GFE  +R++    +  RQT++FSAT P +IQ  A     + + ++VG     AN DV Q     ++ AK   L + +Q+     VL+FC+
Sbjct:  173 GDGPMVVVLAPTRELAQQIEEETKKVIPG-------DVYCGCVYGGAPKGPQLGLLRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDELRKLMQEHREERVLVFCK 353          

HSP 2 Score: 26.1794 bits (56), Expect = 9.294e-28
Identity = 8/19 (42.11%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  673 EAVAVHGGKDQEEREYAIS 729
            +A+A+HG K+Q +RE+ ++
Sbjct:  371 DAMAIHGDKEQRQREFILA 389          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.297e-28
Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617
            PG+GP  L++ P+RELA Q  E +++F    R      +R     GGV    Q+  + RGV + +ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++    +  RQTL++SAT P +++  A   L   + VN+G    AAN  + Q VE V    K++  I ++ + ++     +LIF
Sbjct:  204 PGDGPIVLVLAPTRELAVQIQEEMKKFGRSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHMEKVMENKENKILIF 387          

HSP 2 Score: 23.0978 bits (48), Expect = 9.297e-28
Identity = 7/17 (41.18%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+++HG K Q ER++ +
Sbjct:  408 ALSIHGDKQQNERDWVL 424          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.071e-27
Identity = 76/220 (34.55%), Postives = 122/220 (55.45%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  LI+ P+REL  Q ++   +F           ++  +  GG D+ +QL  ++RG  ++ ATPGRL D++ + +++L N R+L LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ  A+  L + V ++VGR G+ + ++ Q++EYV+ + K   LL+ L   P     LIF E + M    ++       G+     +R+ RER
Sbjct:  276 PSTLILAPTRELVSQIHDEARKFTYRSW------VKPAVVYGGADIVTQLRQIERGCDLLSATPGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFEPQIRRIVEGEDMPGVMDRQTLMFSATFPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRER 489          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_GIBZE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella zeae GN=PRP5 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.197e-27
Identity = 68/176 (38.64%), Postives = 99/176 (56.25%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            +GP  LI+ P+RELA Q ++  + FL  M       LR +   GG  +R Q+  +KRG  I+V TPGR+ D+LA  +    NL    Y+ LDEADR+ D+GFE  + ++F + +  RQT+LFSATMP  I +  +  L  P+ V VG       ++ Q VE   + +K   +LE L
Sbjct:  669 DGPIGLIMTPTRELAVQIHKDCKPFLKMM------GLRAVCAYGGAPIREQIAELKRGAEIIVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFSATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELL 838          

HSP 2 Score: 25.0238 bits (53), Expect = 1.197e-27
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAIS 729
            +++HGGKDQ +R+  IS
Sbjct:  875 MSIHGGKDQIDRDSTIS 891          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.210e-27
Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            PG+GP  L++ P+RELA Q  +   +F    R      +R     GGV    Q+  ++RGV I++ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L  P+ V +G    +    I ++     ++ K++    +L    Q     ++IF   +
Sbjct:  183 PGDGPIVLVLAPTRELAVQIQKECSKFGASSR------IRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTK 370          

HSP 2 Score: 23.8682 bits (50), Expect = 1.210e-27
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+A+HG K Q ER++ ++
Sbjct:  387 ALAIHGDKAQNERDWVLA 404          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.572e-27
Identity = 72/193 (37.31%), Postives = 107/193 (55.44%), Query Frame = 3
Query:   72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENRLM 635
            GP  L++ P+RELA Q      +F       G     +  C+ GG     QL+ ++RGV IVVATPGRL D+L  K+++L    YL LDEADR++D+GFE  IR++ +    +RQTL+++AT P +++  A   LV P  VN+G      AN  + Q +E +    K   L + L+   P   ++IFC  + M
Sbjct:  233 GPTILVLSPTRELATQIQVEALKF-------GKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRM 418          

HSP 2 Score: 21.9422 bits (45), Expect = 1.572e-27
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  676 AVAVHGGKDQEERE 717
            A A+HG K Q ER+
Sbjct:  432 AAAIHGDKSQAERD 445          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3_DICDI (Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum GN=ddx3 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.827e-27
Identity = 75/198 (37.88%), Postives = 113/198 (57.07%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ--KTPPPVLIFCENRLMLTTFT 650
            P  L++ P+RELA+Q ++   +F       G P + +++  GG ++  Q+  + RG  I+VAT GRL D+L + +++L   +YL LDEADR++D+GFE  IR++   F       RQTL+FSAT P +IQN A   L   + + VG  G    ++ Q +EYV +E K  YLL+ L   K+    LIF E +    T T
Sbjct:  331 PRALVLAPTRELAQQIFDEANKF-----SYGSP-VSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQ-NITQRIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLT 521          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPOR (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae GN=prp5 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.028e-27
Identity = 67/176 (38.07%), Postives = 101/176 (57.39%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            EGP  LI+ P+RELA Q ++  + FL  +      +LR +   GG  ++ Q+  +KRG  I+V TPGR+ D+LA     + N R   Y+ LDEADR+ D+GFE  + ++  + +  +QT+LFSAT P  ++  AR  L KPV + VG       ++ Q VE   ++ K + LLE L
Sbjct:  626 EGPVGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIADLKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELL 795          

HSP 2 Score: 23.483 bits (49), Expect = 2.028e-27
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAI 726
            +++HGGKDQ +R+  I
Sbjct:  834 MSIHGGKDQIDRDSTI 849          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_DROME (ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 2.043e-27
Identity = 71/195 (36.41%), Postives = 109/195 (55.90%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLECLQKT---PPPVLIFCENR 629
            G+GP  L++ P+RELA+Q    ++Q  T    + Y  +R     GG     Q+  ++RG  IV+ATPGRL D L+    NL  C YL LDEADR++D+GFE  IR++    +  RQTL++SAT P +++  A   L   + +N+G    +AN ++ Q V+      +E K+  LL  +  T   P  ++IF E +
Sbjct:  352 GDGPIALVLAPTRELAQQ----IQQVATEFGSSSY--VRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETK 540          

HSP 2 Score: 22.7126 bits (47), Expect = 2.043e-27
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  682 AVHGGKDQEEREYAI 726
            A+HG K Q ER++ +
Sbjct:  559 AIHGDKSQSERDFVL 573          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH37_ARATH9.278e-2837.14DEAD-box ATP-dependent RNA helicase 37 OS=Arabidop... [more]
DDX17_TRYBB9.294e-2837.77Putative DEAD-box RNA helicase HEL64 OS=Trypanosom... [more]
DBP2_GIBZE9.297e-2838.42ATP-dependent RNA helicase DBP2 OS=Gibberella zeae... [more]
DED1_USTMA1.071e-2734.55ATP-dependent RNA helicase DED1 OS=Ustilago maydis... [more]
PRP5_GIBZE1.197e-2738.64Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DBP2_KLULA1.210e-2735.05ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
RH46_ARATH1.572e-2737.31DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
DDX3_DICDI1.827e-2737.88Probable ATP-dependent RNA helicase ddx3 OS=Dictyo... [more]
PRP5_ASPOR2.028e-2738.07Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DDX17_DROME2.043e-2736.41ATP-dependent RNA helicase p62 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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