FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 9.278e-28 Identity = 65/175 (37.14%), Postives = 106/175 (60.57%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 P +I+ P+RELA Q ++ ++F + ++ ++ GG + QL ++RGV I+VATPGRL D+L + ++++ R+L LDEADR++D+GFE IR++ + + RQTLLFSAT P +IQ A L + + VGR G++ ++Q VE+V K +L++ L Sbjct: 238 PLAVILSPTRELASQIHDEAKKF------SYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLL 406 HSP 2 Score: 23.8682 bits (50), Expect = 9.278e-28 Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAISS 732 A ++HG + Q+ERE A+ + Sbjct: 445 ATSIHGDRTQQEREVALKA 463
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_TRYBB (Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma brucei brucei GN=HEL64 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 9.294e-28 Identity = 71/188 (37.77%), Postives = 108/188 (57.45%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCE 623 G+GP +++ P+RELA+Q E ++ + D+ GG QL +++RGVHI+VATPGRL D L K++NL YL LDEADR++D+GFE +R++ + RQT++FSAT P +IQ A + + ++VG AN DV Q ++ AK L + +Q+ VL+FC+ Sbjct: 173 GDGPMVVVLAPTRELAQQIEEETKKVIPG-------DVYCGCVYGGAPKGPQLGLLRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDELRKLMQEHREERVLVFCK 353 HSP 2 Score: 26.1794 bits (56), Expect = 9.294e-28 Identity = 8/19 (42.11%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 673 EAVAVHGGKDQEEREYAIS 729 +A+A+HG K+Q +RE+ ++ Sbjct: 371 DAMAIHGDKEQRQREFILA 389
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 9.297e-28 Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617 PG+GP L++ P+RELA Q E +++F R +R GGV Q+ + RGV + +ATPGRL DML K NL YL LDEADR++D+GFE IR++ + RQTL++SAT P +++ A L + VN+G AAN + Q VE V K++ I ++ + ++ +LIF Sbjct: 204 PGDGPIVLVLAPTRELAVQIQEEMKKFGRSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHMEKVMENKENKILIF 387 HSP 2 Score: 23.0978 bits (48), Expect = 9.297e-28 Identity = 7/17 (41.18%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAI 726 A+++HG K Q ER++ + Sbjct: 408 ALSIHGDKQQNERDWVL 424
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.071e-27 Identity = 76/220 (34.55%), Postives = 122/220 (55.45%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716 P LI+ P+REL Q ++ +F ++ + GG D+ +QL ++RG ++ ATPGRL D++ + +++L N R+L LDEADR++D+GFE IR + + RQTL+FSAT P IQ A+ L + V ++VGR G+ + ++ Q++EYV+ + K LL+ L P LIF E + M ++ G+ +R+ RER Sbjct: 276 PSTLILAPTRELVSQIHDEARKFTYRSW------VKPAVVYGGADIVTQLRQIERGCDLLSATPGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFEPQIRRIVEGEDMPGVMDRQTLMFSATFPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRER 489
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_GIBZE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella zeae GN=PRP5 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.197e-27 Identity = 68/176 (38.64%), Postives = 99/176 (56.25%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 +GP LI+ P+RELA Q ++ + FL M LR + GG +R Q+ +KRG I+V TPGR+ D+LA + NL Y+ LDEADR+ D+GFE + ++F + + RQT+LFSATMP I + + L P+ V VG ++ Q VE + +K +LE L Sbjct: 669 DGPIGLIMTPTRELAVQIHKDCKPFLKMM------GLRAVCAYGGAPIREQIAELKRGAEIIVCTPGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFSATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELL 838 HSP 2 Score: 25.0238 bits (53), Expect = 1.197e-27 Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAIS 729 +++HGGKDQ +R+ IS Sbjct: 875 MSIHGGKDQIDRDSTIS 891
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.210e-27 Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 PG+GP L++ P+RELA Q + +F R +R GGV Q+ ++RGV I++ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L P+ V +G + I ++ ++ K++ +L Q ++IF + Sbjct: 183 PGDGPIVLVLAPTRELAVQIQKECSKFGASSR------IRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTK 370 HSP 2 Score: 23.8682 bits (50), Expect = 1.210e-27 Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+A+HG K Q ER++ ++ Sbjct: 387 ALAIHGDKAQNERDWVLA 404
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 1.572e-27 Identity = 72/193 (37.31%), Postives = 107/193 (55.44%), Query Frame = 3 Query: 72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENRLM 635 GP L++ P+RELA Q +F G + C+ GG QL+ ++RGV IVVATPGRL D+L K+++L YL LDEADR++D+GFE IR++ + +RQTL+++AT P +++ A LV P VN+G AN + Q +E + K L + L+ P ++IFC + M Sbjct: 233 GPTILVLSPTRELATQIQVEALKF-------GKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRM 418 HSP 2 Score: 21.9422 bits (45), Expect = 1.572e-27 Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 1 Query: 676 AVAVHGGKDQEERE 717 A A+HG K Q ER+ Sbjct: 432 AAAIHGDKSQAERD 445
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3_DICDI (Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum GN=ddx3 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.827e-27 Identity = 75/198 (37.88%), Postives = 113/198 (57.07%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ--KTPPPVLIFCENRLMLTTFT 650 P L++ P+RELA+Q ++ +F G P + +++ GG ++ Q+ + RG I+VAT GRL D+L + +++L +YL LDEADR++D+GFE IR++ F RQTL+FSAT P +IQN A L + + VG G ++ Q +EYV +E K YLL+ L K+ LIF E + T T Sbjct: 331 PRALVLAPTRELAQQIFDEANKF-----SYGSP-VSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQ-NITQRIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLT 521
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPOR (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae GN=prp5 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 2.028e-27 Identity = 67/176 (38.07%), Postives = 101/176 (57.39%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 EGP LI+ P+RELA Q ++ + FL + +LR + GG ++ Q+ +KRG I+V TPGR+ D+LA + N R Y+ LDEADR+ D+GFE + ++ + + +QT+LFSAT P ++ AR L KPV + VG ++ Q VE ++ K + LLE L Sbjct: 626 EGPVGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIADLKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSATFPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELL 795 HSP 2 Score: 23.483 bits (49), Expect = 2.028e-27 Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAI 726 +++HGGKDQ +R+ I Sbjct: 834 MSIHGGKDQIDRDSTI 849
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_DROME (ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3) HSP 1 Score: 120.939 bits (302), Expect = 2.043e-27 Identity = 71/195 (36.41%), Postives = 109/195 (55.90%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLECLQKT---PPPVLIFCENR 629 G+GP L++ P+RELA+Q ++Q T + Y +R GG Q+ ++RG IV+ATPGRL D L+ NL C YL LDEADR++D+GFE IR++ + RQTL++SAT P +++ A L + +N+G +AN ++ Q V+ +E K+ LL + T P ++IF E + Sbjct: 352 GDGPIALVLAPTRELAQQ----IQQVATEFGSSSY--VRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETK 540 HSP 2 Score: 22.7126 bits (47), Expect = 2.043e-27 Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 1 Query: 682 AVHGGKDQEEREYAI 726 A+HG K Q ER++ + Sbjct: 559 AIHGDKSQSERDFVL 573 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |