FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_PHANO (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Phaeosphaeria nodorum GN=PRP28 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.933e-27 Identity = 63/206 (30.58%), Postives = 108/206 (52.43%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--------------------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT---PPPVLIF 617 +GP+ +++ P+RELA+Q +F P+ T + +GG + Q ++ G IV+ATPGRL D + ++ + L C Y+ +DEADR++D+GFE+ + ++ D RQT++++ATMPT ++ AR L +P V +G G A V Q VE+++ E K L+ + + PP+++F Sbjct: 402 DGPYAIVLAPTRELAQQIEVETRKFAAPL------GFNTAVIVGGHSIEEQAFQMRDGAEIVIATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPVTNEKPDSDAAEDPNAMKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVETVEQRVEHIQGEEKRKKRLQEILNSGEFTPPIIVF 601 HSP 2 Score: 24.2534 bits (51), Expect = 9.933e-27 Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 +V +HG K QE+RE A++ Sbjct: 622 SVTLHGSKTQEQREAALA 639
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_ASPCL (ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus GN=dbp2 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.979e-27 Identity = 70/190 (36.84%), Postives = 104/190 (54.74%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617 PG+GP L++ P+RELA Q + +F R +R GGV Q+ + RGV + +ATPGRL DML + NL YL LDEADR++D+GFE IR++ + RQT ++SAT P +++ A L + VN+G +AN + Q VE V K++ I +L + ++ +LIF Sbjct: 195 PGDGPIVLVLAPTRELAVQIQTEITKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMEDRSNKILIF 378 HSP 2 Score: 24.2534 bits (51), Expect = 9.979e-27 Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+++HG K Q+ER++ ++ Sbjct: 399 ALSIHGDKQQQERDWVLN 416
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 9.994e-27 Identity = 63/176 (35.80%), Postives = 101/176 (57.39%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQ 590 G+GP L++ P+RELA Q + +F + + ++T GGV Q+ +++GV IV+ATPGRL DM+ NL YL LDEADR++D+GF+ IR++ H + RQTL +SAT P +++ ++ L P V +G + AN + Q V+ + + K L++ L+ Sbjct: 170 GDGPIVLVLAPTRELAVQIQQEASKFGSSSK------IKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLE 339 HSP 2 Score: 24.6386 bits (52), Expect = 9.994e-27 Identity = 10/32 (31.25%), Postives = 20/32 (62.50%), Query Frame = 1 Query: 634 C*RHSRISTLERIEAVAVHGGKDQEEREYAIS 729 C + +R ++ A+++HG K Q ER++ +S Sbjct: 357 CDQITRQLRMDGWPALSIHGDKSQAERDWVLS 388
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.293e-26 Identity = 68/205 (33.17%), Postives = 105/205 (51.22%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-----------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT-PPPVLIFCENR 629 EGP+ +++ P+RELA+Q E +F T Y ++ + +GG + Q +++G +V+ATPGRL D L ++ L+ C Y+ LDEADR++D+GFE + V D + R T +FSATMP ++ AR L PV V +G AG A + Q V K+ K+ L + L P ++FC + Sbjct: 390 EGPYAVVMAPTRELAQQIEEETVKFAT------YLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMTKESEKMSRLQKILTDLGDKPAIVFCNTK 588 HSP 2 Score: 23.483 bits (49), Expect = 1.293e-26 Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1 Query: 685 VHGGKDQEEREYAI 726 +HGGK QE+RE ++ Sbjct: 608 LHGGKSQEQRETSL 621
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_ASPNC (ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.298e-26 Identity = 71/190 (37.37%), Postives = 103/190 (54.21%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617 PG+GP LI+ P+RELA Q + +F R +R GGV Q+ + RGV + +ATPGRL DML + NL YL LDEADR++D+GFE IR++ + RQT ++SAT P +++ A L + VN+G +AN + Q VE V K++ I +L + ++ LIF Sbjct: 207 PGDGPIVLILAPTRELAVQIQAEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRANKCLIF 390 HSP 2 Score: 24.2534 bits (51), Expect = 1.298e-26 Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+++HG K Q+ER++ ++ Sbjct: 411 ALSIHGDKQQQERDWVLN 428
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.299e-26 Identity = 67/178 (37.64%), Postives = 99/178 (55.62%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK 593 PG+GP LI+ P+RELA Q + +F R +R GGV Q+ + RGV + +ATPGRL DML + NL YL LDEADR++D+GFE IR++ + RQT ++SAT P +++ A L + VN+G +AN + Q VE + + K +++ L+K Sbjct: 210 PGDGPIVLILAPTRELAVQIQAEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEK 381 HSP 2 Score: 24.2534 bits (51), Expect = 1.299e-26 Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+++HG K Q+ER++ ++ Sbjct: 414 ALSIHGDKQQQERDWVLN 431
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.672e-26 Identity = 68/178 (38.20%), Postives = 96/178 (53.93%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 PGEG LI+ P+RELA Q + ++F + LRT GG + Q+ +KRG IVV TPGR+ D+L + N R +L LDEADR+ D+GF I + D + RQT++FSAT P K++N A+ L KP+ + G + D+ Q VE E + L+E L Sbjct: 579 PGEGMIALIMSPTRELALQIHVECKKFSKVL------GLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELL 750 HSP 2 Score: 23.483 bits (49), Expect = 1.672e-26 Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 1 Query: 673 EAVAVHGGKDQEEREYAIS 729 + +++HG KDQ +R+ IS Sbjct: 782 QCLSLHGSKDQTDRDETIS 800
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.680e-26 Identity = 68/209 (32.54%), Postives = 106/209 (50.72%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ---------------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE-AKIVYLLECLQKTPPPVLIFCENR 629 +GP+ L++ P+REL +Q + F A + R + +GG + Q V +G I++ATPGRL D L K+ + L+ C Y+ LDEAD ++DLGFE + V D + R T+LFSATMP ++ ++ L +P T+ +G AG + Q V +VK E K +L + ++ PPP +I N+ Sbjct: 488 DGPYALVMAPTRELVQQIEKETRNF------AQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNK 690 HSP 2 Score: 23.0978 bits (48), Expect = 1.680e-26 Identity = 8/20 (40.00%), Postives = 13/20 (65.00%), Query Frame = 1 Query: 667 RIEAVAVHGGKDQEEREYAI 726 R+ +H G+ QE+RE A+ Sbjct: 705 RVSYTILHSGRSQEQREAAL 724
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_YARLI (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica GN=PRP28 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.690e-26 Identity = 68/205 (33.17%), Postives = 113/205 (55.12%), Query Frame = 3 Query: 72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF----------DHFKAQ----------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTP--PPVLIF 617 GP+ LI+ P+RELA Q + +F P+ + + +GG + Q V+ G ++VATPGRL D++ ++ + L+ C Y+ +DEADR+VD+GFE+ +++V D +A+ RQT++++ATMP I+ A+ L +P V +G AG A V Q VE++ E + LL+ + K PP+++F Sbjct: 239 GPYGLILAPTRELAMQIKDEAVKFCAPL------GFKVVSVVGGYSAQEQALAVQEGAELIVATPGRLLDVIDRRLLVLNQCCYVVMDEADRMVDMGFEEQVQKVLASLPSSNAKPDSDEAENLAAVSTRRYRQTMMYTATMPVAIEKLAKKYLRRPGIVTIGSAGQAGSTVTQLVEFLNTDEKRKRRLLDIISKRQYRPPIVVF 437 HSP 2 Score: 26.1794 bits (56), Expect = 1.690e-26 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1 Query: 685 VHGGKDQEEREYAI 726 +HGGK QE+RE A+ Sbjct: 461 IHGGKQQEQREQAV 474
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_ASPFU (ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus GN=dbp2 PE=3 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.691e-26 Identity = 71/190 (37.37%), Postives = 103/190 (54.21%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617 PG+GP LI+ P+RELA Q + +F R +R GGV Q+ + RGV + +ATPGRL DML + NL YL LDEADR++D+GFE IR++ + RQT ++SAT P +++ A L + VN+G +AN + Q VE V K++ I +L + ++ LIF Sbjct: 191 PGDGPIVLILAPTRELAVQIQAEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRSNKCLIF 374 HSP 2 Score: 24.2534 bits (51), Expect = 1.691e-26 Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+++HG K Q+ER++ ++ Sbjct: 395 ALSIHGDKQQQERDWVLN 412 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |