FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_PHANO (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Phaeosphaeria nodorum GN=PRP28 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.933e-27
Identity = 63/206 (30.58%), Postives = 108/206 (52.43%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--------------------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT---PPPVLIF 617
            +GP+ +++ P+RELA+Q      +F  P+         T + +GG  +  Q   ++ G  IV+ATPGRL D + ++ + L  C Y+ +DEADR++D+GFE+ + ++ D                         RQT++++ATMPT ++  AR  L +P  V +G  G A   V Q VE+++ E K    L+ +  +    PP+++F
Sbjct:  402 DGPYAIVLAPTRELAQQIEVETRKFAAPL------GFNTAVIVGGHSIEEQAFQMRDGAEIVIATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPVTNEKPDSDAAEDPNAMKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVETVEQRVEHIQGEEKRKKRLQEILNSGEFTPPIIVF 601          

HSP 2 Score: 24.2534 bits (51), Expect = 9.933e-27
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            +V +HG K QE+RE A++
Sbjct:  622 SVTLHGSKTQEQREAALA 639          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_ASPCL (ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus GN=dbp2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.979e-27
Identity = 70/190 (36.84%), Postives = 104/190 (54.74%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617
            PG+GP  L++ P+RELA Q    + +F    R      +R     GGV    Q+  + RGV + +ATPGRL DML   + NL    YL LDEADR++D+GFE  IR++    +  RQT ++SAT P +++  A   L   + VN+G    +AN  + Q VE V    K++  I +L + ++     +LIF
Sbjct:  195 PGDGPIVLVLAPTRELAVQIQTEITKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMEDRSNKILIF 378          

HSP 2 Score: 24.2534 bits (51), Expect = 9.979e-27
Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+++HG K Q+ER++ ++
Sbjct:  399 ALSIHGDKQQQERDWVLN 416          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.994e-27
Identity = 63/176 (35.80%), Postives = 101/176 (57.39%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQ 590
            G+GP  L++ P+RELA Q  +   +F +  +      ++T    GGV    Q+  +++GV IV+ATPGRL DM+     NL    YL LDEADR++D+GF+  IR++  H +  RQTL +SAT P +++  ++  L  P  V +G +   AN  + Q V+ + +  K   L++ L+
Sbjct:  170 GDGPIVLVLAPTRELAVQIQQEASKFGSSSK------IKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLE 339          

HSP 2 Score: 24.6386 bits (52), Expect = 9.994e-27
Identity = 10/32 (31.25%), Postives = 20/32 (62.50%), Query Frame = 1
Query:  634 C*RHSRISTLERIEAVAVHGGKDQEEREYAIS 729
            C + +R   ++   A+++HG K Q ER++ +S
Sbjct:  357 CDQITRQLRMDGWPALSIHGDKSQAERDWVLS 388          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.293e-26
Identity = 68/205 (33.17%), Postives = 105/205 (51.22%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-----------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT-PPPVLIFCENR 629
            EGP+ +++ P+RELA+Q  E   +F T      Y  ++ +  +GG  +  Q   +++G  +V+ATPGRL D L ++   L+ C Y+ LDEADR++D+GFE  +  V D   +                  R T +FSATMP  ++  AR  L  PV V +G AG A   + Q V   K+  K+  L + L      P ++FC  +
Sbjct:  390 EGPYAVVMAPTRELAQQIEEETVKFAT------YLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMTKESEKMSRLQKILTDLGDKPAIVFCNTK 588          

HSP 2 Score: 23.483 bits (49), Expect = 1.293e-26
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  685 VHGGKDQEEREYAI 726
            +HGGK QE+RE ++
Sbjct:  608 LHGGKSQEQRETSL 621          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_ASPNC (ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.298e-26
Identity = 71/190 (37.37%), Postives = 103/190 (54.21%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617
            PG+GP  LI+ P+RELA Q    + +F    R      +R     GGV    Q+  + RGV + +ATPGRL DML   + NL    YL LDEADR++D+GFE  IR++    +  RQT ++SAT P +++  A   L   + VN+G    +AN  + Q VE V    K++  I +L + ++      LIF
Sbjct:  207 PGDGPIVLILAPTRELAVQIQAEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRANKCLIF 390          

HSP 2 Score: 24.2534 bits (51), Expect = 1.298e-26
Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+++HG K Q+ER++ ++
Sbjct:  411 ALSIHGDKQQQERDWVLN 428          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.299e-26
Identity = 67/178 (37.64%), Postives = 99/178 (55.62%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK 593
            PG+GP  LI+ P+RELA Q    + +F    R      +R     GGV    Q+  + RGV + +ATPGRL DML   + NL    YL LDEADR++D+GFE  IR++    +  RQT ++SAT P +++  A   L   + VN+G    +AN  + Q VE + +  K   +++ L+K
Sbjct:  210 PGDGPIVLILAPTRELAVQIQAEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEK 381          

HSP 2 Score: 24.2534 bits (51), Expect = 1.299e-26
Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+++HG K Q+ER++ ++
Sbjct:  414 ALSIHGDKQQQERDWVLN 431          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.672e-26
Identity = 68/178 (38.20%), Postives = 96/178 (53.93%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            PGEG   LI+ P+RELA Q +   ++F   +       LRT    GG  +  Q+  +KRG  IVV TPGR+ D+L      + N R   +L LDEADR+ D+GF   I  + D  +  RQT++FSAT P K++N A+  L KP+ +  G     + D+ Q VE    E +   L+E L
Sbjct:  579 PGEGMIALIMSPTRELALQIHVECKKFSKVL------GLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELL 750          

HSP 2 Score: 23.483 bits (49), Expect = 1.672e-26
Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  673 EAVAVHGGKDQEEREYAIS 729
            + +++HG KDQ +R+  IS
Sbjct:  782 QCLSLHGSKDQTDRDETIS 800          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.680e-26
Identity = 68/209 (32.54%), Postives = 106/209 (50.72%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ---------------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE-AKIVYLLECLQKTPPPVLIFCENR 629
            +GP+ L++ P+REL +Q  +    F      A +   R +  +GG  +  Q   V +G  I++ATPGRL D L K+ + L+ C Y+ LDEAD ++DLGFE  +  V D   +                      R T+LFSATMP  ++  ++  L +P T+ +G AG     + Q V +VK E  K  +L + ++  PPP +I   N+
Sbjct:  488 DGPYALVMAPTRELVQQIEKETRNF------AQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNK 690          

HSP 2 Score: 23.0978 bits (48), Expect = 1.680e-26
Identity = 8/20 (40.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:  667 RIEAVAVHGGKDQEEREYAI 726
            R+    +H G+ QE+RE A+
Sbjct:  705 RVSYTILHSGRSQEQREAAL 724          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_YARLI (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica GN=PRP28 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.690e-26
Identity = 68/205 (33.17%), Postives = 113/205 (55.12%), Query Frame = 3
Query:   72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF----------DHFKAQ----------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK-QEAKIVYLLECLQKTP--PPVLIF 617
            GP+ LI+ P+RELA Q  +   +F  P+        + +  +GG   + Q   V+ G  ++VATPGRL D++ ++ + L+ C Y+ +DEADR+VD+GFE+ +++V           D  +A+          RQT++++ATMP  I+  A+  L +P  V +G AG A   V Q VE++   E +   LL+ + K    PP+++F
Sbjct:  239 GPYGLILAPTRELAMQIKDEAVKFCAPL------GFKVVSVVGGYSAQEQALAVQEGAELIVATPGRLLDVIDRRLLVLNQCCYVVMDEADRMVDMGFEEQVQKVLASLPSSNAKPDSDEAENLAAVSTRRYRQTMMYTATMPVAIEKLAKKYLRRPGIVTIGSAGQAGSTVTQLVEFLNTDEKRKRRLLDIISKRQYRPPIVVF 437          

HSP 2 Score: 26.1794 bits (56), Expect = 1.690e-26
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  685 VHGGKDQEEREYAI 726
            +HGGK QE+RE A+
Sbjct:  461 IHGGKQQEQREQAV 474          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_ASPFU (ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus GN=dbp2 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.691e-26
Identity = 71/190 (37.37%), Postives = 103/190 (54.21%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617
            PG+GP  LI+ P+RELA Q    + +F    R      +R     GGV    Q+  + RGV + +ATPGRL DML   + NL    YL LDEADR++D+GFE  IR++    +  RQT ++SAT P +++  A   L   + VN+G    +AN  + Q VE V    K++  I +L + ++      LIF
Sbjct:  191 PGDGPIVLILAPTRELAVQIQAEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRSNKCLIF 374          

HSP 2 Score: 24.2534 bits (51), Expect = 1.691e-26
Identity = 7/18 (38.89%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+++HG K Q+ER++ ++
Sbjct:  395 ALSIHGDKQQQERDWVLN 412          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP28_PHANO9.933e-2730.58Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DBP2_ASPCL9.979e-2736.84ATP-dependent RNA helicase dbp2 OS=Aspergillus cla... [more]
RH20_ARATH9.994e-2735.80DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
RH21_ORYSJ1.293e-2633.17DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sa... [more]
DBP2_ASPNC1.298e-2637.37ATP-dependent RNA helicase dbp2 OS=Aspergillus nig... [more]
DBP2_EMENI1.299e-2637.64ATP-dependent RNA helicase dbp2 OS=Emericella nidu... [more]
DDX46_DICDI1.672e-2638.20ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]
DDX23_DICDI1.680e-2632.54ATP-dependent RNA helicase ddx23 OS=Dictyostelium ... [more]
PRP28_YARLI1.690e-2633.17Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DBP2_ASPFU1.691e-2637.37ATP-dependent RNA helicase dbp2 OS=Aspergillus fum... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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