FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 6.309e-26
Identity = 74/190 (38.95%), Postives = 103/190 (54.21%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENR 629
            +GP  LI+ P+RELA Q  E   +F   +R      +R+    GG     Q+  ++RGV IV+ATPGRL DML  +  NL    YL LDEADR++D+GFE  IR++    +  RQTLL+SAT P +++  AR  L  P    +G     AN  + Q +E V    K   LL  L++      +LIF E +
Sbjct:  237 DGPIVLILAPTRELAVQIQEESRKF--GLRSG----VRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETK 420          

HSP 2 Score: 23.0978 bits (48), Expect = 6.309e-26
Identity = 10/32 (31.25%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  634 C*RHSRISTLERIEAVAVHGGKDQEEREYAIS 729
            C + +R   ++   A+A+HG K Q ER+  ++
Sbjct:  423 CDQVTRQLRMDGWPALAIHGDKTQSERDRVLA 454          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.324e-26
Identity = 69/197 (35.03%), Postives = 110/197 (55.84%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650
            PG+GP  L++ P+RELA Q  + + +F    R      +R     GGV    Q+  + +GV + +ATPGRL DM+   K NL    YL LDEADR++D+GFE  IR++    +  RQT ++SAT P +++  A   L + + VN+G    +AN  + Q VE V +  K   + + L+K    ++   +N++++ T T
Sbjct:  172 PGDGPIVLVLAPTRELAVQIQQEITKFGKSSR------IRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEK----IMEDKDNKILIFTGT 358          

HSP 2 Score: 23.483 bits (49), Expect = 6.324e-26
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+++HG K Q ER++ ++
Sbjct:  376 ALSIHGDKQQNERDWVLN 393          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.069e-25
Identity = 69/197 (35.03%), Postives = 109/197 (55.33%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650
            PG+GP  L++ P+RELA Q  + + +F    R      +R     GGV    Q+  + +GV + +ATPGRL DM+   K NL    YL LDEADR++D+GFE  IR++    +  RQT ++SAT P +++  A   L   + VN+G    +AN  + Q VE V +  K   + + L+K    ++   +N++++ T T
Sbjct:  219 PGDGPIVLVLAPTRELAVQIQQEITKFGKSSR------IRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEK----IMEDKDNKILIFTGT 405          

HSP 2 Score: 23.483 bits (49), Expect = 1.069e-25
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+++HG K Q ER++ ++
Sbjct:  423 ALSIHGDKQQNERDWVLN 440          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_CANAL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida albicans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 63/168 (37.50%), Postives = 94/168 (55.95%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 563
            +GP  LI+ P+RELA Q  + +  F     +     LR   C GG  + +Q+  +K+GV I+V TPGR+ D+LA      +NL  C ++ LDEADR+ DLGFE  + ++    +  RQT+LFSAT P K++  A+  L  PV + VG       ++ QEV   +  A+
Sbjct:  366 QGPIGLILSPTRELALQIEKEILNFTKRNNN-----LRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAE 528          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_ASPOR (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus oryzae GN=prp28 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.384e-25
Identity = 63/211 (29.86%), Postives = 106/211 (50.24%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-------------------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT---PPPVLIF 617
            +GP+ +++ P+RELA+Q     ++F  P+          +  +GG     Q   ++ G  I++ATPGRL D + ++ + L  C Y+ +DEADR++DLGFE+ + ++ D                              RQT++++ATMPT ++  AR  L +P  V +G AG A   V Q VE++  E K    L  +  +    PP+++F
Sbjct:  444 DGPYAIVLAPTRELAQQIEIEAKKFTEPL------GFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEFIAGEDKRKKRLGDILSSGEFRPPIIVF 648          

HSP 2 Score: 25.7942 bits (55), Expect = 1.384e-25
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            +V +HG K QE+RE A++S
Sbjct:  669 SVTLHGSKTQEQREAALAS 687          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.393e-25
Identity = 70/190 (36.84%), Postives = 101/190 (53.16%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617
            PG+GP  L++ P+RELA Q    + +F    R      +R     GGV    Q+  + RGV + +ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++    +  RQT ++SAT P +++  A   L   + V +G    +AN  + Q VE V    K++  I +L   +      +LIF
Sbjct:  195 PGDGPIVLVLAPTRELAVQIQAEITKFGKSSR------IRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERIMDDKKSKILIF 378          

HSP 2 Score: 23.483 bits (49), Expect = 1.393e-25
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+++HG K Q ER++ ++
Sbjct:  399 ALSIHGDKQQNERDWVLN 416          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP3_EMENI (ATP-dependent RNA helicase dbp3 OS=Emericella nidulans GN=dbp3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.710e-25
Identity = 69/191 (36.13%), Postives = 110/191 (57.59%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVG-------RAGAANLDVIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFC 620
            P  +++ P+RELA Q Y+ + +F   +      D++     GGV    Q E +K    +VVATPGRLKD+     ++L   +YL LDEADR++D GFE DI+++      ++RQT++F+AT P  ++N A + +  PVTV +G       RA +    V++ V+  ++E ++V +L   Q+ TP  VL FC
Sbjct:  147 PLAVVISPTRELAMQIYDQLVKFAEKV------DIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFC 330          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX4_RANLE (Probable ATP-dependent RNA helicase DDX4 OS=Rana lessonae GN=ddx4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.805e-25
Identity = 73/180 (40.56%), Postives = 103/180 (57.22%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPD-LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDH----FKAQRQTLLFSATMPTKIQNFARSALVKP--VTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK 593
            P  +IV P+REL  Q Y    +F        Y   +R ++  GG  M   L+ +  G +I+ ATPGRL D++ K+K+ L   RYL LDEADR++D+GF +DI  +        K +RQTL+FSAT P+ IQ+ AR  ++KP  + V VG+ G A  DV Q V  V +  K   L+E LQ+
Sbjct:  364 PEAIIVAPTRELINQIYLDARKF-------SYGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLARE-ILKPDYLFVVVGQVGGACSDVEQMVIEVDEFGKKDKLMEILQE 535          

HSP 2 Score: 26.1794 bits (56), Expect = 1.805e-25
Identity = 8/21 (38.10%), Postives = 17/21 (80.95%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            E++ + ++HG ++Q+ERE A+
Sbjct:  561 EKVPSTSIHGDREQKERETAL 581          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP3_ASPTN (ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25
Identity = 73/190 (38.42%), Postives = 110/190 (57.89%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA----ANLDVIQEVEYVK---QEAKIVYLLECLQKTPPPVLIFC 620
            P  +I+ P+RELA Q ++ +++F  P+        +     GGV    Q EV+K   +IVVATPGRLKD+     ++L   RYL LDEADR++D GFE DI+++      ++RQT++F+AT P  ++  A + +  PVTV +G   +    AN  + Q VE VK   +E ++V LL+  Q+    VL FC
Sbjct:  153 PMAVIISPTRELAMQIHDQLQKFAGPV------GAKVACIFGGVRKDEQREVLKTA-NIVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVSKRQTVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGRLVQLLKQHQRGAEKVLAFC 335          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_GIBZE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella zeae GN=PRP28 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.349e-25
Identity = 65/211 (30.81%), Postives = 106/211 (50.24%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA-------------------------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT---PPPVLIF 617
            +GP+ LI+ P+REL +Q      +F  P+        R +  +GG  +  Q   ++ G  IVVATPGRL D + ++ + L  C Y+ +DEADR++DLGFE+ + ++ D                              RQT++++ATMP  ++  A+  L +P  V +G AG A   V Q VE+V  E +    L+ +  +    PP+++F
Sbjct:  363 DGPYALIMAPTRELVQQIETEARKFAGPL------GFRVVSIVGGHQIEEQAYNLRDGAEIVVATPGRLLDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVTNEKPDTDEAENAQIMQRYLGGRDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGEAVDTVEQRVEFVSGEDRRKKRLQEILSSGNFGPPIIVF 567          

HSP 2 Score: 26.5646 bits (57), Expect = 2.349e-25
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            AV +HG K QE+RE A+ S
Sbjct:  588 AVTLHGSKTQEQREAALGS 606          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH30_ARATH6.309e-2638.95DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
DBP2_BOTFB6.324e-2635.03ATP-dependent RNA helicase dbp2 OS=Botryotinia fuc... [more]
DBP2_SCLS11.069e-2535.03ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl... [more]
PRP5_CANAL1.310e-2537.50Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP28_ASPOR1.384e-2529.86Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DBP2_COCIM1.393e-2536.84ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]
DBP3_EMENI1.710e-2536.13ATP-dependent RNA helicase dbp3 OS=Emericella nidu... [more]
DDX4_RANLE1.805e-2540.56Probable ATP-dependent RNA helicase DDX4 OS=Rana l... [more]
DBP3_ASPTN2.234e-2538.42ATP-dependent RNA helicase dbp3 OS=Aspergillus ter... [more]
PRP28_GIBZE2.349e-2530.81Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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