FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 6.309e-26 Identity = 74/190 (38.95%), Postives = 103/190 (54.21%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENR 629 +GP LI+ P+RELA Q E +F +R +R+ GG Q+ ++RGV IV+ATPGRL DML + NL YL LDEADR++D+GFE IR++ + RQTLL+SAT P +++ AR L P +G AN + Q +E V K LL L++ +LIF E + Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKF--GLRSG----VRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETK 420 HSP 2 Score: 23.0978 bits (48), Expect = 6.309e-26 Identity = 10/32 (31.25%), Postives = 19/32 (59.38%), Query Frame = 1 Query: 634 C*RHSRISTLERIEAVAVHGGKDQEEREYAIS 729 C + +R ++ A+A+HG K Q ER+ ++ Sbjct: 423 CDQVTRQLRMDGWPALAIHGDKTQSERDRVLA 454
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 6.324e-26 Identity = 69/197 (35.03%), Postives = 110/197 (55.84%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650 PG+GP L++ P+RELA Q + + +F R +R GGV Q+ + +GV + +ATPGRL DM+ K NL YL LDEADR++D+GFE IR++ + RQT ++SAT P +++ A L + + VN+G +AN + Q VE V + K + + L+K ++ +N++++ T T Sbjct: 172 PGDGPIVLVLAPTRELAVQIQQEITKFGKSSR------IRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEK----IMEDKDNKILIFTGT 358 HSP 2 Score: 23.483 bits (49), Expect = 6.324e-26 Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+++HG K Q ER++ ++ Sbjct: 376 ALSIHGDKQQNERDWVLN 393
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.069e-25 Identity = 69/197 (35.03%), Postives = 109/197 (55.33%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650 PG+GP L++ P+RELA Q + + +F R +R GGV Q+ + +GV + +ATPGRL DM+ K NL YL LDEADR++D+GFE IR++ + RQT ++SAT P +++ A L + VN+G +AN + Q VE V + K + + L+K ++ +N++++ T T Sbjct: 219 PGDGPIVLVLAPTRELAVQIQQEITKFGKSSR------IRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEK----IMEDKDNKILIFTGT 405 HSP 2 Score: 23.483 bits (49), Expect = 1.069e-25 Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+++HG K Q ER++ ++ Sbjct: 423 ALSIHGDKQQNERDWVLN 440
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_CANAL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida albicans GN=PRP5 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25 Identity = 63/168 (37.50%), Postives = 94/168 (55.95%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 563 +GP LI+ P+RELA Q + + F + LR C GG + +Q+ +K+GV I+V TPGR+ D+LA +NL C ++ LDEADR+ DLGFE + ++ + RQT+LFSAT P K++ A+ L PV + VG ++ QEV + A+ Sbjct: 366 QGPIGLILSPTRELALQIEKEILNFTKRNNN-----LRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAE 528
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_ASPOR (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus oryzae GN=prp28 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.384e-25 Identity = 63/211 (29.86%), Postives = 106/211 (50.24%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-------------------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT---PPPVLIF 617 +GP+ +++ P+RELA+Q ++F P+ + +GG Q ++ G I++ATPGRL D + ++ + L C Y+ +DEADR++DLGFE+ + ++ D RQT++++ATMPT ++ AR L +P V +G AG A V Q VE++ E K L + + PP+++F Sbjct: 444 DGPYAIVLAPTRELAQQIEIEAKKFTEPL------GFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEFIAGEDKRKKRLGDILSSGEFRPPIIVF 648 HSP 2 Score: 25.7942 bits (55), Expect = 1.384e-25 Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAISS 732 +V +HG K QE+RE A++S Sbjct: 669 SVTLHGSKTQEQREAALAS 687
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.393e-25 Identity = 70/190 (36.84%), Postives = 101/190 (53.16%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIF 617 PG+GP L++ P+RELA Q + +F R +R GGV Q+ + RGV + +ATPGRL DML K NL YL LDEADR++D+GFE IR++ + RQT ++SAT P +++ A L + V +G +AN + Q VE V K++ I +L + +LIF Sbjct: 195 PGDGPIVLVLAPTRELAVQIQAEITKFGKSSR------IRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERIMDDKKSKILIF 378 HSP 2 Score: 23.483 bits (49), Expect = 1.393e-25 Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+++HG K Q ER++ ++ Sbjct: 399 ALSIHGDKQQNERDWVLN 416
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP3_EMENI (ATP-dependent RNA helicase dbp3 OS=Emericella nidulans GN=dbp3 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.710e-25 Identity = 69/191 (36.13%), Postives = 110/191 (57.59%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVG-------RAGAANLDVIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFC 620 P +++ P+RELA Q Y+ + +F + D++ GGV Q E +K +VVATPGRLKD+ ++L +YL LDEADR++D GFE DI+++ ++RQT++F+AT P ++N A + + PVTV +G RA + V++ V+ ++E ++V +L Q+ TP VL FC Sbjct: 147 PLAVVISPTRELAMQIYDQLVKFAEKV------DIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFC 330
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX4_RANLE (Probable ATP-dependent RNA helicase DDX4 OS=Rana lessonae GN=ddx4 PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.805e-25 Identity = 73/180 (40.56%), Postives = 103/180 (57.22%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPD-LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDH----FKAQRQTLLFSATMPTKIQNFARSALVKP--VTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK 593 P +IV P+REL Q Y +F Y +R ++ GG M L+ + G +I+ ATPGRL D++ K+K+ L RYL LDEADR++D+GF +DI + K +RQTL+FSAT P+ IQ+ AR ++KP + V VG+ G A DV Q V V + K L+E LQ+ Sbjct: 364 PEAIIVAPTRELINQIYLDARKF-------SYGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLARE-ILKPDYLFVVVGQVGGACSDVEQMVIEVDEFGKKDKLMEILQE 535 HSP 2 Score: 26.1794 bits (56), Expect = 1.805e-25 Identity = 8/21 (38.10%), Postives = 17/21 (80.95%), Query Frame = 1 Query: 664 ERIEAVAVHGGKDQEEREYAI 726 E++ + ++HG ++Q+ERE A+ Sbjct: 561 EKVPSTSIHGDREQKERETAL 581
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP3_ASPTN (ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp3 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25 Identity = 73/190 (38.42%), Postives = 110/190 (57.89%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA----ANLDVIQEVEYVK---QEAKIVYLLECLQKTPPPVLIFC 620 P +I+ P+RELA Q ++ +++F P+ + GGV Q EV+K +IVVATPGRLKD+ ++L RYL LDEADR++D GFE DI+++ ++RQT++F+AT P ++ A + + PVTV +G + AN + Q VE VK +E ++V LL+ Q+ VL FC Sbjct: 153 PMAVIISPTRELAMQIHDQLQKFAGPV------GAKVACIFGGVRKDEQREVLKTA-NIVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVSKRQTVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGRLVQLLKQHQRGAEKVLAFC 335
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_GIBZE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella zeae GN=PRP28 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.349e-25 Identity = 65/211 (30.81%), Postives = 106/211 (50.24%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA-------------------------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT---PPPVLIF 617 +GP+ LI+ P+REL +Q +F P+ R + +GG + Q ++ G IVVATPGRL D + ++ + L C Y+ +DEADR++DLGFE+ + ++ D RQT++++ATMP ++ A+ L +P V +G AG A V Q VE+V E + L+ + + PP+++F Sbjct: 363 DGPYALIMAPTRELVQQIETEARKFAGPL------GFRVVSIVGGHQIEEQAYNLRDGAEIVVATPGRLLDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVTNEKPDTDEAENAQIMQRYLGGRDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGEAVDTVEQRVEFVSGEDRRKKRLQEILSSGNFGPPIIVF 567 HSP 2 Score: 26.5646 bits (57), Expect = 2.349e-25 Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAISS 732 AV +HG K QE+RE A+ S Sbjct: 588 AVTLHGSKTQEQREAALGS 606 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |