FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.798e-30
Identity = 71/177 (40.11%), Postives = 109/177 (61.58%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK 593
            P  L++ P+RELA Q  E  ++F      +    LR ++  GG  M +QL  ++RG  I+VATPGRL DM+ + K++L+  +YL +DEADR++D+GFE  IR++ +      K+ RQT+LFSAT P +IQ  A   L   + + VGR G++   ++Q+VE +    K  YLL+ LQ+
Sbjct:  169 PRALVLAPTRELAAQINEEAKKF------SFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQR 339          

HSP 2 Score: 25.409 bits (54), Expect = 2.798e-30
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A A+HG + Q+ERE A+ S
Sbjct:  378 ATAIHGDRTQQERESALRS 396          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.934e-30
Identity = 72/160 (45.00%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 542
            PG+GP  +IVCP+REL +Q +   ++F        Y +LR++   GG  M  Q + ++ G  IVV TPGRL D + KK  NL    YL  DEADR+ D+GFE  +R +  H +  RQTLLFSAT   KI+  AR  L+ P+ V  G  G AN DV Q VE
Sbjct:  323 PGDGPIAVIVCPTRELCQQIHSECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVE 476          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.740e-30
Identity = 68/175 (38.86%), Postives = 106/175 (60.57%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            P  LI+ P+REL+ Q +E   +F      A    ++ ++  GG  +  QL  ++RGV I+VATPGRL D+L + +++L   +YL LDEADR++D+GFE  IR++ +      + +RQT+LFSAT P +IQ  A   L   + + VGR G++   ++Q VE+V    K  YL++ L
Sbjct:  248 PLALILSPTRELSVQIHEEARKF------AYQTGVKVVVAYGGAPITQQLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMDLL 416          

HSP 2 Score: 27.7202 bits (60), Expect = 4.740e-30
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A ++HG + Q+EREYA+ S
Sbjct:  455 ATSIHGDRTQQEREYALRS 473          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.741e-30
Identity = 71/197 (36.04%), Postives = 112/197 (56.85%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--------TPPPVLIFCENR 629
            P  LI+ P+REL+ Q +E   +F      +    +R ++  GG  +  QL  ++RGV I+VATPGRL D+L + +++L + RYL LDEADR++D+GFE  +R + +         RQT+LFSAT P +IQ  A   L   + + VGR G++   ++Q VE+V++  K  +L++ L           P   L+F E +
Sbjct:  236 PLALILSPTRELSMQIHEEARKF------SYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDSATPGKPTLTLVFVETK 426          

HSP 2 Score: 28.4906 bits (62), Expect = 4.741e-30
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A ++HG ++Q+EREYA+ S
Sbjct:  443 ATSIHGDRNQQEREYALRS 461          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_MOUSE (ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 72/160 (45.00%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 542
            PG+GP  +IVCP+REL +Q +   ++F        Y +LR++   GG  M  Q + ++ G  IVV TPGRL D + KK  NL    YL  DEADR+ D+GFE  +R +  H +  RQTLLFSAT   KI+  AR  L+ P+ V  G  G AN DV Q VE
Sbjct:  323 PGDGPIAVIVCPTRELCQQIHAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVE 476          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_HUMAN (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 72/160 (45.00%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 542
            PG+GP  +IVCP+REL +Q +   ++F        Y +LR++   GG  M  Q + ++ G  IVV TPGRL D + KK  NL    YL  DEADR+ D+GFE  +R +  H +  RQTLLFSAT   KI+  AR  L+ P+ V  G  G AN DV Q VE
Sbjct:  323 PGDGPIAVIVCPTRELCQQIHAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVE 476          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 66/165 (40.00%), Postives = 99/165 (60.00%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 560
            G+GP  L + P+RELA Q Y      L  ++ + Y  L+T +  GGV  + Q + +K G  I+VATPGRL DM+  K   L+   YL LDEAD++ D GF   +  + +H +  RQTLLFSAT    ++ FAR+ L  P+ +++G  G+AN D+ Q V+ +K ++
Sbjct:  376 GDGPIALFLAPTRELAHQIY------LETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDS 534          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_NEOFI (ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.166e-30
Identity = 77/193 (39.90%), Postives = 113/193 (58.55%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLM 635
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +        +RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L    T    LIF E + M
Sbjct:  278 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRM 464          

HSP 2 Score: 25.7942 bits (55), Expect = 6.166e-30
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            +R  A A+HG + Q ERE A+
Sbjct:  475 QRFPATAIHGDRTQRERERAL 495          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_ASPFU (ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.167e-30
Identity = 77/193 (39.90%), Postives = 113/193 (58.55%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLM 635
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +        +RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L    T    LIF E + M
Sbjct:  276 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRM 462          

HSP 2 Score: 25.7942 bits (55), Expect = 6.167e-30
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            +R  A A+HG + Q ERE A+
Sbjct:  473 QRFPATAIHGDRTQRERERAL 493          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_ASPNC (ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ded1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.028e-30
Identity = 78/200 (39.00%), Postives = 116/200 (58.00%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD-----HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLMLTTFTN 653
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +     H    RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L    T    LIF E + M  + ++
Sbjct:  275 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVN-DRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSD 467          

HSP 2 Score: 25.7942 bits (55), Expect = 8.028e-30
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            +R  A A+HG + Q ERE A+
Sbjct:  472 QRFPATAIHGDRTQRERERAL 492          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH52A_ORYSJ2.798e-3040.11DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
DDX42_CHICK3.934e-3045.00ATP-dependent RNA helicase DDX42 OS=Gallus gallus ... [more]
RH52B_ORYSJ4.740e-3038.86DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]
RH52C_ORYSJ4.741e-3036.04DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
DDX42_MOUSE5.138e-3045.00ATP-dependent RNA helicase DDX42 OS=Mus musculus G... [more]
DDX42_HUMAN5.138e-3045.00ATP-dependent RNA helicase DDX42 OS=Homo sapiens G... [more]
DDX42_DICDI5.138e-3040.00Probable ATP-dependent RNA helicase ddx42 OS=Dicty... [more]
DED1_NEOFI6.166e-3039.90ATP-dependent RNA helicase ded1 OS=Neosartorya fis... [more]
DED1_ASPFU6.167e-3039.90ATP-dependent RNA helicase ded1 OS=Aspergillus fum... [more]
DED1_ASPNC8.028e-3039.00ATP-dependent RNA helicase ded1 OS=Aspergillus nig... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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