FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 2.798e-30 Identity = 71/177 (40.11%), Postives = 109/177 (61.58%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK 593 P L++ P+RELA Q E ++F + LR ++ GG M +QL ++RG I+VATPGRL DM+ + K++L+ +YL +DEADR++D+GFE IR++ + K+ RQT+LFSAT P +IQ A L + + VGR G++ ++Q+VE + K YLL+ LQ+ Sbjct: 169 PRALVLAPTRELAAQINEEAKKF------SFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQR 339 HSP 2 Score: 25.409 bits (54), Expect = 2.798e-30 Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAISS 732 A A+HG + Q+ERE A+ S Sbjct: 378 ATAIHGDRTQQERESALRS 396
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.934e-30 Identity = 72/160 (45.00%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 542 PG+GP +IVCP+REL +Q + ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P+ V G G AN DV Q VE Sbjct: 323 PGDGPIAVIVCPTRELCQQIHSECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVE 476
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.740e-30 Identity = 68/175 (38.86%), Postives = 106/175 (60.57%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 P LI+ P+REL+ Q +E +F A ++ ++ GG + QL ++RGV I+VATPGRL D+L + +++L +YL LDEADR++D+GFE IR++ + + +RQT+LFSAT P +IQ A L + + VGR G++ ++Q VE+V K YL++ L Sbjct: 248 PLALILSPTRELSVQIHEEARKF------AYQTGVKVVVAYGGAPITQQLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMDLL 416 HSP 2 Score: 27.7202 bits (60), Expect = 4.740e-30 Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAISS 732 A ++HG + Q+EREYA+ S Sbjct: 455 ATSIHGDRTQQEREYALRS 473
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 4.741e-30 Identity = 71/197 (36.04%), Postives = 112/197 (56.85%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--------TPPPVLIFCENR 629 P LI+ P+REL+ Q +E +F + +R ++ GG + QL ++RGV I+VATPGRL D+L + +++L + RYL LDEADR++D+GFE +R + + RQT+LFSAT P +IQ A L + + VGR G++ ++Q VE+V++ K +L++ L P L+F E + Sbjct: 236 PLALILSPTRELSMQIHEEARKF------SYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDSATPGKPTLTLVFVETK 426 HSP 2 Score: 28.4906 bits (62), Expect = 4.741e-30 Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAISS 732 A ++HG ++Q+EREYA+ S Sbjct: 443 ATSIHGDRNQQEREYALRS 461
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_MOUSE (ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3) HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30 Identity = 72/160 (45.00%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 542 PG+GP +IVCP+REL +Q + ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P+ V G G AN DV Q VE Sbjct: 323 PGDGPIAVIVCPTRELCQQIHAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVE 476
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_HUMAN (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30 Identity = 72/160 (45.00%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 542 PG+GP +IVCP+REL +Q + ++F Y +LR++ GG M Q + ++ G IVV TPGRL D + KK NL YL DEADR+ D+GFE +R + H + RQTLLFSAT KI+ AR L+ P+ V G G AN DV Q VE Sbjct: 323 PGDGPIAVIVCPTRELCQQIHAECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVE 476
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30 Identity = 66/165 (40.00%), Postives = 99/165 (60.00%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 560 G+GP L + P+RELA Q Y L ++ + Y L+T + GGV + Q + +K G I+VATPGRL DM+ K L+ YL LDEAD++ D GF + + +H + RQTLLFSAT ++ FAR+ L P+ +++G G+AN D+ Q V+ +K ++ Sbjct: 376 GDGPIALFLAPTRELAHQIY------LETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDS 534
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_NEOFI (ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 6.166e-30 Identity = 77/193 (39.90%), Postives = 113/193 (58.55%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLM 635 P LI+ P+REL Q ++ +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE IR + + +RQTL+FSAT P IQ AR L V ++VGR G+ + ++ Q+VEYV+ K LL+ L T LIF E + M Sbjct: 278 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRM 464 HSP 2 Score: 25.7942 bits (55), Expect = 6.166e-30 Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1 Query: 664 ERIEAVAVHGGKDQEEREYAI 726 +R A A+HG + Q ERE A+ Sbjct: 475 QRFPATAIHGDRTQRERERAL 495
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_ASPFU (ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus GN=ded1 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 6.167e-30 Identity = 77/193 (39.90%), Postives = 113/193 (58.55%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLM 635 P LI+ P+REL Q ++ +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE IR + + +RQTL+FSAT P IQ AR L V ++VGR G+ + ++ Q+VEYV+ K LL+ L T LIF E + M Sbjct: 276 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRM 462 HSP 2 Score: 25.7942 bits (55), Expect = 6.167e-30 Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1 Query: 664 ERIEAVAVHGGKDQEEREYAI 726 +R A A+HG + Q ERE A+ Sbjct: 473 QRFPATAIHGDRTQRERERAL 493
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_ASPNC (ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ded1 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 8.028e-30 Identity = 78/200 (39.00%), Postives = 116/200 (58.00%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD-----HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLMLTTFTN 653 P LI+ P+REL Q ++ +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE IR + + H RQTL+FSAT P IQ AR L V ++VGR G+ + ++ Q+VEYV+ K LL+ L T LIF E + M + ++ Sbjct: 275 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVN-DRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSD 467 HSP 2 Score: 25.7942 bits (55), Expect = 8.028e-30 Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1 Query: 664 ERIEAVAVHGGKDQEEREYAI 726 +R A A+HG + Q ERE A+ Sbjct: 472 QRFPATAIHGDRTQRERERAL 492 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |