FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_ASPOR (ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae GN=ded1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.029e-30
Identity = 78/200 (39.00%), Postives = 116/200 (58.00%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD-----HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLMLTTFTN 653
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +     H    RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L    T    LIF E + M  + ++
Sbjct:  274 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVN-DRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSD 466          

HSP 2 Score: 25.7942 bits (55), Expect = 8.029e-30
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            +R  A A+HG + Q ERE A+
Sbjct:  471 QRFPATAIHGDRTQRERERAL 491          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_ASPTN (ATP-dependent RNA helicase ded1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ded1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.029e-30
Identity = 78/200 (39.00%), Postives = 116/200 (58.00%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD-----HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLMLTTFTN 653
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +     H    RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L    T    LIF E + M  + ++
Sbjct:  274 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVN-DRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSD 466          

HSP 2 Score: 25.7942 bits (55), Expect = 8.029e-30
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            +R  A A+HG + Q ERE A+
Sbjct:  471 QRFPATAIHGDRTQRERERAL 491          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.035e-30
Identity = 69/175 (39.43%), Postives = 105/175 (60.00%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            P  LI+ P+REL+ Q +E   +F      A    +R ++  GG  +  QL  ++RGV I+VATPGRL D+L + +++L   +YL LDEADR++D+GFE  IR++ +      +  RQT+LFSAT P +IQ  A   L   + + VGR G++   + Q VE+V +  K  YL++ L
Sbjct:  253 PLALILSPTRELSVQIHEEARKF------AYQTGVRVVVAYGGAPIHQQLRELERGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYLMDLL 421          

HSP 2 Score: 27.7202 bits (60), Expect = 8.035e-30
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A ++HG + Q+EREYA+ S
Sbjct:  460 ATSIHGDRTQQEREYALRS 478          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_PONAB (ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.764e-30
Identity = 72/160 (45.00%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 542
            PG+GP  +IVCP+REL +Q +   ++F        Y +LR++   GG  M  Q + ++ G  IVV TPGRL D + KK  NL    YL  DEADR+ D+GFE  +R +  H +  RQTLLFSAT   KI+  AR  L+ P+ V  G  G AN DV Q VE
Sbjct:  323 PGDGPIAVIVCPTRELCQQIHAEGKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVE 476          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3Y_HUMAN (ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.764e-30
Identity = 75/191 (39.27%), Postives = 113/191 (59.16%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629
            P  L++ P+RELA Q YE   +F    R      +R  +  GG D+  Q+  ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE  IR + +      K  R T++FSAT P +IQ  AR  L + + + VGR G+ + ++ Q+V +V+   K  +LL+ L  T      L+F E +
Sbjct:  265 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETK 449          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3X_MOUSE (ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.764e-30
Identity = 74/191 (38.74%), Postives = 114/191 (59.69%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENR 629
            P  L++ P+RELA Q YE   +F    R      +R  +  GG ++  Q+  ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE  IR + +      K  R T++FSAT P +IQ  AR  L + + + VGR G+ + ++ Q+V +V++  K  +LL+ L  T      L+F E +
Sbjct:  267 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETK 451          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_YEAST (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae GN=DED1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.047e-29
Identity = 74/198 (37.37%), Postives = 116/198 (58.59%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ-KTPPPVLIFCENRLMLTTFTN 653
            P  +I+ P+RELA Q ++  ++F           ++  +  GG  + +QL  ++RG  ++VATPGRL D+L + K++L N +YL LDEADR++D+GFE  IR + +        +RQTL+FSAT P  IQ+ AR  L   + ++VGR G+ + ++ Q+V YV+ + K   LL+ L   T    LIF E + M    T+
Sbjct:  226 PTAVIMAPTRELATQIFDEAKKFTYRSW------VKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTD 417          

HSP 2 Score: 25.7942 bits (55), Expect = 1.047e-29
Identity = 9/24 (37.50%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            ++   A A+HG + Q ERE A+++
Sbjct:  421 MQNFRATAIHGDRTQSERERALAA 444          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_YEAS7 (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DED1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.047e-29
Identity = 74/198 (37.37%), Postives = 116/198 (58.59%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ-KTPPPVLIFCENRLMLTTFTN 653
            P  +I+ P+RELA Q ++  ++F           ++  +  GG  + +QL  ++RG  ++VATPGRL D+L + K++L N +YL LDEADR++D+GFE  IR + +        +RQTL+FSAT P  IQ+ AR  L   + ++VGR G+ + ++ Q+V YV+ + K   LL+ L   T    LIF E + M    T+
Sbjct:  226 PTAVIMAPTRELATQIFDEAKKFTYRSW------VKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTD 417          

HSP 2 Score: 25.7942 bits (55), Expect = 1.047e-29
Identity = 9/24 (37.50%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            ++   A A+HG + Q ERE A+++
Sbjct:  421 MQNFRATAIHGDRTQSERERALAA 444          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX42_XENLA (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.145e-29
Identity = 71/160 (44.38%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 542
            P +GP  +IVCP+REL +Q +   ++F        Y +LR++   GG  M  Q + ++ G  IVV TPGRL D + KK  NL    YL  DEADR+ D+GFE  +R + +H +  RQTLLFSAT   KI+  AR  LV P+ V  G  G AN D+ Q VE
Sbjct:  320 PADGPIAVIVCPTRELCQQIHSECKRF-----GKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVE 473          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3Y_PONAB (ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.145e-29
Identity = 75/191 (39.27%), Postives = 113/191 (59.16%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT--PPPVLIFCENR 629
            P  L++ P+RELA Q YE   +F    R      +R  +  GG D+  Q+  ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE  IR + +      K  R T++FSAT P +IQ  AR  L + + + VGR G+ + ++ Q+V +V+   K  +LL+ L  T      L+F E +
Sbjct:  265 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDLLGATGRDSLTLVFVETK 449          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DED1_ASPOR8.029e-3039.00ATP-dependent RNA helicase ded1 OS=Aspergillus ory... [more]
DED1_ASPTN8.029e-3039.00ATP-dependent RNA helicase ded1 OS=Aspergillus ter... [more]
RH37_ORYSJ8.035e-3039.43DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]
DDX42_PONAB8.764e-3045.00ATP-dependent RNA helicase DDX42 OS=Pongo abelii G... [more]
DDX3Y_HUMAN8.764e-3039.27ATP-dependent RNA helicase DDX3Y OS=Homo sapiens G... [more]
DDX3X_MOUSE8.764e-3038.74ATP-dependent RNA helicase DDX3X OS=Mus musculus G... [more]
DED1_YEAST1.047e-2937.37ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DED1_YEAS71.047e-2937.37ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DDX42_XENLA1.145e-2944.38ATP-dependent RNA helicase DDX42 OS=Xenopus laevis... [more]
DDX3Y_PONAB1.145e-2939.27ATP-dependent RNA helicase DDX3Y OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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