FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.145e-29
Identity = 75/191 (39.27%), Postives = 113/191 (59.16%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENR 629
            P  L++ P+RELA Q YE   +F    R      +R  +  GG D+  Q+  ++RG H++VATPGRL DM+ + K+ LD C+YL LDEADR++D+GFE  IR + +      K  R T++FSAT P +IQ  AR  L + + + VGR G+ + ++ Q+V +V+   K  +LL+ L    T    L+F E +
Sbjct:  265 PISLVLAPTRELAVQIYEEARKFSYRSR------VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGAAGTDSLTLVFVETK 449          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.351e-29
Identity = 66/177 (37.29%), Postives = 100/177 (56.50%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            G+GP  L++ P+REL +Q +  + +F  P+       +R +   GG  +  Q+  +KRG  IVV TPGR+ D+L      + N R   +L +DEADR+ D+GFE  I  +  + + +RQT+LFSAT P +++  AR  L KPV + VG     N D+ Q VE   +  + + LLE L
Sbjct:  600 GDGPIGLVMAPTRELVQQIHSDIRKFSKPL------GIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 770          

HSP 2 Score: 26.1794 bits (56), Expect = 1.351e-29
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAIS 729
            +++HGGKDQ +RE  IS
Sbjct:  804 LSLHGGKDQTDRESTIS 820          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.361e-29
Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLM 635
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L    T    LIF E + M
Sbjct:  272 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRM 458          

HSP 2 Score: 25.7942 bits (55), Expect = 1.361e-29
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            +R  A A+HG + Q ERE A+
Sbjct:  469 QRFPATAIHGDRTQRERERAL 489          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX23_PONAB (Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.767e-29
Identity = 72/214 (33.64%), Postives = 112/214 (52.34%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ--------------------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL-QKTPPPVLIFCENR 629
            +GP+ +I+ P+RELA+Q  E   +F  P+       +RT+  IGG+    Q   ++ G  IV+ATPGRL D+L  + +    C Y+ LDEADR++D+GFE D++++ +H                              RQT++F+ATMP  ++  ARS L +P  V +G AG  +  V Q+V  + +  K   LL  L Q   PP++IF   +
Sbjct:  467 QGPYAIILAPTRELAQQIEEETIKFGKPL------GIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVPSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQK 674          

HSP 2 Score: 29.261 bits (64), Expect = 1.767e-29
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A  +HGGK QE+RE+A+S+
Sbjct:  691 ACTLHGGKGQEQREFALSN 709          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_ASPCL (ATP-dependent RNA helicase ded1 OS=Aspergillus clavatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.772e-29
Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TPPPVLIFCENRLM 635
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N  YL LDEADR++D+GFE  IR + +        +RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L    T    LIF E + M
Sbjct:  277 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNINYLVLDEADRMLDMGFEPQIRRIVEGEDMPSVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHGTSGLTLIFVETKRM 463          

HSP 2 Score: 25.7942 bits (55), Expect = 1.772e-29
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            +R  A A+HG + Q ERE A+
Sbjct:  474 QRFPATAIHGDRTQRERERAL 494          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.777e-29
Identity = 72/193 (37.31%), Postives = 102/193 (52.85%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            G+GP  L++ P+RELA Q      +F    R      +R     GG     Q+  +  GV I +ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P ++QN AR  L  P+ V +G    A    I ++     EY K++  + +L   L  +   VL+F   +
Sbjct:  187 GDGPIVLVLAPTRELACQIQTECSKFGASSR------IRNTCVYGGAPKGPQIRDLANGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQNLARDYLDNPIQVTIGSLELAASHTITQIVQVVTEYQKRDLLVKHLESALADSNSKVLVFASTK 373          

HSP 2 Score: 25.0238 bits (53), Expect = 1.777e-29
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+A+HG K+Q ER++ +
Sbjct:  390 ALAIHGDKEQHERDWVL 406          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.013e-29
Identity = 76/200 (38.00%), Postives = 107/200 (53.50%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650
            PG+GP  LI+ P+RELA Q      +F       G   LRT    GGV    Q+  ++RG  I +ATPGRL DM+   K NL    YL +DEADR++D+GFE  IR++    +  RQTL+FSAT P ++Q  A   L     VN+G    AAN +V Q +E     +++ K++  LE +      V+IF   + +    T
Sbjct:  200 PGDGPIALILAPTRELANQIQVECNRF------GGSSRLRTCAVYGGVPKGPQIRDLQRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFSATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIGHLETISAENGKVIIFTSTKRVADDLT 393          

HSP 2 Score: 25.409 bits (54), Expect = 3.013e-29
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+A+HG K Q+ER++ ++
Sbjct:  403 ALAIHGDKQQQERDWVLA 420          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_EMENI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella nidulans GN=prp5 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.882e-29
Identity = 69/176 (39.20%), Postives = 101/176 (57.39%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            EGP  LI+ P+RELA Q ++  + FL  +      +LR +   GG  ++ Q+  +KRG  I+V TPGR+ D+LA     + N R   Y+ LDEADR+ D+GFE  + ++  + +  RQT+LFSAT P  ++  AR  L KP+ + VG       ++ Q VE   +E K V LLE L
Sbjct:  613 EGPIGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELL 782          

HSP 2 Score: 23.483 bits (49), Expect = 3.882e-29
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAI 726
            +++HGGKDQ +R+  I
Sbjct:  821 MSIHGGKDQIDRDSTI 836          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.902e-29
Identity = 69/175 (39.43%), Postives = 105/175 (60.00%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            P  L++ P+RELA Q +E  ++F    R      +R  +  GG +   Q+  + RG H++VATPGRL+DM+ + K+ L+N R+L LDEADR++D+GFE  IR + +        QRQTL+FSAT P +IQ  A   L   + + VGR G+ + ++ Q + +V +  K  YLL+ L
Sbjct:  379 PLGLVLAPTRELATQIFEEAKKFAYRSR------MRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLL 547          

HSP 2 Score: 21.1718 bits (43), Expect = 3.902e-29
Identity = 7/15 (46.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  682 AVHGGKDQEEREYAI 726
            ++HG + Q+ERE A+
Sbjct:  588 SIHGDRTQKEREEAL 602          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 3.921e-29
Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK 593
            PG+GP  LI+ P+RELA Q  + + +F    R      +R     GGV    Q+  + RGV + +ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++    +  RQTL++SAT P +++N A   L   + VN+G    AAN  + Q VE V +  K   +++ L+K
Sbjct:  202 PGDGPIVLILAPTRELAVQIQQEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEK 373          

HSP 2 Score: 23.0978 bits (48), Expect = 3.921e-29
Identity = 7/17 (41.18%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+++HG K Q ER++ +
Sbjct:  408 ALSIHGDKQQNERDWVL 424          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX3Y_PANTR1.145e-2939.27ATP-dependent RNA helicase DDX3Y OS=Pan troglodyte... [more]
RH42_ARATH1.351e-2937.29DEAD-box ATP-dependent RNA helicase 42 OS=Arabidop... [more]
DED1_EMENI1.361e-2939.90ATP-dependent RNA helicase ded1 OS=Emericella nidu... [more]
DDX23_PONAB1.767e-2933.64Probable ATP-dependent RNA helicase DDX23 OS=Pongo... [more]
DED1_ASPCL1.772e-2939.90ATP-dependent RNA helicase ded1 OS=Aspergillus cla... [more]
DBP2_LODEL1.777e-2937.31ATP-dependent RNA helicase DBP2 OS=Lodderomyces el... [more]
DBP2_USTMA3.013e-2938.00ATP-dependent RNA helicase DBP2 OS=Ustilago maydis... [more]
PRP5_EMENI3.882e-2939.20Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DDX3_DROME3.902e-2939.43ATP-dependent RNA helicase bel OS=Drosophila melan... [more]
DBP2_NEUCR3.921e-2940.45ATP-dependent RNA helicase dbp-2 OS=Neurospora cra... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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