FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: SPB4_YARLI (ATP-dependent rRNA helicase SPB4 OS=Yarrowia lipolytica GN=SPB4 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 73/210 (34.76%), Postives = 101/210 (48.10%), Query Frame = 3
Query:   69 EGP------FCLIVCPSRELARQTYEVVEQFLT---PMRDAGYP-----------------DLRTLLCIGGVDMRSQLEV---VKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV--TVNVGRAGAANLDVIQEVEYVKQE--AKIVYLLECLQKTP 599
            EGP      + ++V P+RELARQTYEV++  L    P  DA                     +R  L +GG D+ S +++   ++    I+VATPGRL ++L   ++       L LDEADRL+DLGF  DI  + +    QR+T LFSAT+   IQN  +  L  PV   V VG        +   + YV  E   K+ Y L  L   P
Sbjct:   71 EGPAVSGRVYSVVVSPTRELARQTYEVLQSILEMGCPEADASDKITLEKKKKGKAAPTMPKKIRGQLIMGG-DLPSHMDLKNFLRDKPQIIVATPGRLLELLRAPQIKTSAFDSLVLDEADRLLDLGFGRDITSIINILPKQRRTGLFSATITDAIQNLVKIGLRNPVKIVVKVGGKKEQKTPLSLGLSYVVLEPREKLAYALNLLSIYP 279          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 64/190 (33.68%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   78 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK---IVYLL-ECLQKTPPPVLIFCENR 629
            +  ++ P+RELA+Q  E  +   + M       +RT   +GG++M  Q   + R  HI++ATPGRL D L   K  +L N ++L +DEADRL+D+ F   +  +      + R T LFSATM +KI    R++L  PV   V         ++Q +  V    K   ++YLL E + KT   V+IF   +
Sbjct:  143 YACVLAPTRELAQQIKETFDSLGSLM------GVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKT---VIIFTRTK 323          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB9 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS195) GN=rhlB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN 626
            P  +I+ P+RELA Q  +        +  A +  L+  +  GG     Q +V+ +GV I++ T GR+ D + +  + L++ + + LDEADR+ DLGF  DIR +F       QR  +LFSAT+  K+Q  A   + +PV V +      + ++ +E+ Y  QE K+  LL  +++  P   I   N
Sbjct:   85 PRAIIMAPTRELAIQIAK------DAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSN 264          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB8 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS185) GN=rhlB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN 626
            P  +I+ P+RELA Q  +        +  A +  L+  +  GG     Q +V+ +GV I++ T GR+ D + +  + L++ + + LDEADR+ DLGF  DIR +F       QR  +LFSAT+  K+Q  A   + +PV V +      + ++ +E+ Y  QE K+  LL  +++  P   I   N
Sbjct:   85 PRAIIMAPTRELAIQIAK------DAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSN 264          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB5 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rhlB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN 626
            P  +I+ P+RELA Q  +        +  A +  L+  +  GG     Q +V+ +GV I++ T GR+ D + +  + L++ + + LDEADR+ DLGF  DIR +F       QR  +LFSAT+  K+Q  A   + +PV V +      + ++ +E+ Y  QE K+  LL  +++  P   I   N
Sbjct:   85 PRAIIMAPTRELAIQIAK------DAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSN 264          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB2 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS223) GN=rhlB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN 626
            P  +I+ P+RELA Q  +        +  A +  L+  +  GG     Q +V+ +GV I++ T GR+ D + +  + L++ + + LDEADR+ DLGF  DIR +F       QR  +LFSAT+  K+Q  A   + +PV V +      + ++ +E+ Y  QE K+  LL  +++  P   I   N
Sbjct:   85 PRAIIMAPTRELAIQIAK------DAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSN 264          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_PSEPK (ATP-dependent RNA helicase rhlB OS=Pseudomonas putida (strain KT2440) GN=rhlB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 59/173 (34.10%), Postives = 89/173 (51.45%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV--KQEAKIVYLL 578
            P  LI+ P+REL  Q  +             Y  L  +  +GG+D   QL+ ++ R   I+VATPGRL D   + +++LD    + LDEADR++D+GF   +R++      K++RQTLLFSAT    + N A+     P  V +     A+  V Q V  V    + K++Y L
Sbjct:   85 PRALIIAPTRELVVQIAKDAAALTK------YTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNL 251          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 45/138 (32.61%), Postives = 79/138 (57.25%), Query Frame = 3
Query:   84 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 497
            +I+ P+RELA QT +V ++    ++      ++ ++  GG  ++  +  + + VH++V TPGR+ D+  K    L NC  L +DEAD+L+   F+  I+E+  +  + RQ L+FSAT P  ++ F    L KP  +N+
Sbjct:  196 VILVPTRELALQTSQVCKELGKHLK------IQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQILMFSATFPVTVKEFKDKYLPKPYVINL 327          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 59/193 (30.57%), Postives = 98/193 (50.78%), Query Frame = 3
Query:   84 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQE--VEYVKQEAKIVYLLECLQK-TPPPVLIFCENRLMLTTFTN 653
            LI+ P+RELA Q   VV+          Y ++ T  CIGG  +   ++ +K+G  IV  TPGR+ DM+ +++++  N + L LDEAD L   GF++ I EV+ +     Q ++ SAT+  ++          PV + V R     L+ I++  V+  K++ K   L +     T    +IFC  +L +   T+
Sbjct:   98 LILSPTRELAVQIQNVVKHL------GDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLPPSVQVVVVSATLSREVLEMTNKFTTDPVKILVKR-DQITLEGIKQYHVQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTD 283          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 3
Query:   84 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV--DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQE--VEYVKQEAKIVYLLECLQK-TPPPVLIFCENR 629
            L++ P+RELA Q+  V+           Y ++    C GG  ++  ++ V +   +V  TPGR+ DM+ ++ +N+ NC+ L LDEAD L+   LGF+  I ++F       Q ++ SATM   I    +  +  PV + V R    +LDVI++  V+  K+E K   L +     T    +IFC  R
Sbjct:   95 LVLSPTRELASQSESVISNL------GDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTR 274          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SPB4_YARLI6.515e-1734.76ATP-dependent rRNA helicase SPB4 OS=Yarrowia lipol... [more]
RRP3_CANGA6.515e-1733.68ATP-dependent rRNA helicase RRP3 OS=Candida glabra... [more]
RHLB_SHEB96.515e-1731.72ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB86.515e-1731.72ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB56.515e-1731.72ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB26.515e-1731.72ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_PSEPK6.515e-1734.10ATP-dependent RNA helicase rhlB OS=Pseudomonas put... [more]
RH6_ORYSJ6.515e-1732.61DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
FAL1_PICST6.515e-1730.57ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
FAL1_KLULA6.515e-1731.55ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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