FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: SPB4_YARLI (ATP-dependent rRNA helicase SPB4 OS=Yarrowia lipolytica GN=SPB4 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 73/210 (34.76%), Postives = 101/210 (48.10%), Query Frame = 3 Query: 69 EGP------FCLIVCPSRELARQTYEVVEQFLT---PMRDAGYP-----------------DLRTLLCIGGVDMRSQLEV---VKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV--TVNVGRAGAANLDVIQEVEYVKQE--AKIVYLLECLQKTP 599 EGP + ++V P+RELARQTYEV++ L P DA +R L +GG D+ S +++ ++ I+VATPGRL ++L ++ L LDEADRL+DLGF DI + + QR+T LFSAT+ IQN + L PV V VG + + YV E K+ Y L L P Sbjct: 71 EGPAVSGRVYSVVVSPTRELARQTYEVLQSILEMGCPEADASDKITLEKKKKGKAAPTMPKKIRGQLIMGG-DLPSHMDLKNFLRDKPQIIVATPGRLLELLRAPQIKTSAFDSLVLDEADRLLDLGFGRDITSIINILPKQRRTGLFSATITDAIQNLVKIGLRNPVKIVVKVGGKKEQKTPLSLGLSYVVLEPREKLAYALNLLSIYP 279
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 64/190 (33.68%), Postives = 98/190 (51.58%), Query Frame = 3 Query: 78 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK---IVYLL-ECLQKTPPPVLIFCENR 629 + ++ P+RELA+Q E + + M +RT +GG++M Q + R HI++ATPGRL D L K +L N ++L +DEADRL+D+ F + + + R T LFSATM +KI R++L PV V ++Q + V K ++YLL E + KT V+IF + Sbjct: 143 YACVLAPTRELAQQIKETFDSLGSLM------GVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKT---VIIFTRTK 323
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB9 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS195) GN=rhlB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN 626 P +I+ P+RELA Q + + A + L+ + GG Q +V+ +GV I++ T GR+ D + + + L++ + + LDEADR+ DLGF DIR +F QR +LFSAT+ K+Q A + +PV V + + ++ +E+ Y QE K+ LL +++ P I N Sbjct: 85 PRAIIMAPTRELAIQIAK------DAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSN 264
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB8 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS185) GN=rhlB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN 626 P +I+ P+RELA Q + + A + L+ + GG Q +V+ +GV I++ T GR+ D + + + L++ + + LDEADR+ DLGF DIR +F QR +LFSAT+ K+Q A + +PV V + + ++ +E+ Y QE K+ LL +++ P I N Sbjct: 85 PRAIIMAPTRELAIQIAK------DAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSN 264
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB5 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rhlB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN 626 P +I+ P+RELA Q + + A + L+ + GG Q +V+ +GV I++ T GR+ D + + + L++ + + LDEADR+ DLGF DIR +F QR +LFSAT+ K+Q A + +PV V + + ++ +E+ Y QE K+ LL +++ P I N Sbjct: 85 PRAIIMAPTRELAIQIAK------DAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSN 264
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB2 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS223) GN=rhlB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCEN 626 P +I+ P+RELA Q + + A + L+ + GG Q +V+ +GV I++ T GR+ D + + + L++ + + LDEADR+ DLGF DIR +F QR +LFSAT+ K+Q A + +PV V + + ++ +E+ Y QE K+ LL +++ P I N Sbjct: 85 PRAIIMAPTRELAIQIAK------DAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEEDWPEKAIVFSN 264
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RHLB_PSEPK (ATP-dependent RNA helicase rhlB OS=Pseudomonas putida (strain KT2440) GN=rhlB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 59/173 (34.10%), Postives = 89/173 (51.45%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV--KQEAKIVYLL 578 P LI+ P+REL Q + Y L + +GG+D QL+ ++ R I+VATPGRL D + +++LD + LDEADR++D+GF +R++ K++RQTLLFSAT + N A+ P V + A+ V Q V V + K++Y L Sbjct: 85 PRALIIAPTRELVVQIAKDAAALTK------YTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNL 251
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 45/138 (32.61%), Postives = 79/138 (57.25%), Query Frame = 3 Query: 84 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 497 +I+ P+RELA QT +V ++ ++ ++ ++ GG ++ + + + VH++V TPGR+ D+ K L NC L +DEAD+L+ F+ I+E+ + + RQ L+FSAT P ++ F L KP +N+ Sbjct: 196 VILVPTRELALQTSQVCKELGKHLK------IQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQILMFSATFPVTVKEFKDKYLPKPYVINL 327
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 59/193 (30.57%), Postives = 98/193 (50.78%), Query Frame = 3 Query: 84 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQE--VEYVKQEAKIVYLLECLQK-TPPPVLIFCENRLMLTTFTN 653 LI+ P+RELA Q VV+ Y ++ T CIGG + ++ +K+G IV TPGR+ DM+ +++++ N + L LDEAD L GF++ I EV+ + Q ++ SAT+ ++ PV + V R L+ I++ V+ K++ K L + T +IFC +L + T+ Sbjct: 98 LILSPTRELAVQIQNVVKHL------GDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLPPSVQVVVVSATLSREVLEMTNKFTTDPVKILVKR-DQITLEGIKQYHVQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTD 283
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17 Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 3 Query: 84 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV--DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQE--VEYVKQEAKIVYLLECLQK-TPPPVLIFCENR 629 L++ P+RELA Q+ V+ Y ++ C GG ++ ++ V + +V TPGR+ DM+ ++ +N+ NC+ L LDEAD L+ LGF+ I ++F Q ++ SATM I + + PV + V R +LDVI++ V+ K+E K L + T +IFC R Sbjct: 95 LVLSPTRELASQSESVISNL------GDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTR 274 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |