FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 3.922e-29 Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR---AGAANLDVIQEV--EYVKQEAKIVYLLECLQKTPPPVLIF 617 G+GP L++ P+RELA Q + +F + +R GGV Q+ + RGV IV+ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P ++Q A L + VN+G + + N+ + EV EY K++ + +L ++ LIF Sbjct: 187 GDGPIVLVLAPTRELAVQIQQECSKFGKSSK------IRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHLETVMENKESKCLIF 369 HSP 2 Score: 25.409 bits (54), Expect = 3.922e-29 Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+A+HG K Q+ER++ ++ Sbjct: 390 ALAIHGDKQQQERDWVLN 407
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPCL (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus GN=prp5 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 5.052e-29 Identity = 70/176 (39.77%), Postives = 102/176 (57.95%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 EGP LI+ P+RELA Q ++ + FL + +LR + GG ++ Q+ +KRG IVV TPGR+ D+LA + N R Y+ LDEADR+ D+GFE + ++ + + RQT+LFSAT P ++ AR AL KP+ + VG ++ Q VE ++ K V LLE L Sbjct: 629 EGPIGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEIL 798 HSP 2 Score: 23.483 bits (49), Expect = 5.052e-29 Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAI 726 +++HGGKDQ +R+ I Sbjct: 837 MSIHGGKDQIDRDSTI 852
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_COCIM (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis GN=PRP5 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.577e-29 Identity = 69/176 (39.20%), Postives = 100/176 (56.82%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 EGP LI+ P+RELA Q ++ + FL + +LR + GG ++ Q+ +KRG I+V TPGR+ D+LA + N R Y+ LDEADR+ D+GFE + ++ + + RQT+LFSAT P ++ AR L KPV + VG ++ Q VE + K V LLE L Sbjct: 631 EGPVGLIMTPTRELATQIHKECKPFLKAL------NLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPSRQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELL 800 HSP 2 Score: 23.8682 bits (50), Expect = 6.577e-29 Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAI 726 +++HGGKDQ +R+ I Sbjct: 839 MSIHGGKDQVDRDSTI 854
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 6.601e-29 Identity = 72/204 (35.29%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK-------QEAKIVYLLECL-----QKTPPPVLIFCENRL 632 G+GP LI+ P+RELA Q ++ + F + ++ + C GG + SQ+ +K+G I+V TPGR+ D+LA NL YL LDEADR+ D+GFE + +VF + RQT+LFSAT P K++ A+ L P+ + VG ++ Q+VE + +EAK LL L + +LIF E ++ Sbjct: 388 GDGPIGLIMTPTRELALQIHKELNHFTKKL------NISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQTVLFSATFPRKMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKLLSTLNDYGDKDAECKILIFVEKQI 585 HSP 2 Score: 29.261 bits (64), Expect = 6.601e-29 Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 1 Query: 664 ERIEAVAVHGGKDQEEREYAI 726 E+ +A+HGGKDQ +R++AI Sbjct: 597 EKYPCLAIHGGKDQIDRKHAI 617
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 6.614e-29 Identity = 74/195 (37.95%), Postives = 106/195 (54.36%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENRLM 635 P GP L++ P+RELA Q E +F R + + GG QL + RGV +VVATPGRL D+L ++++L YL LDEADR++D+GFE IR++ +RQTL+++AT P +++ A LV PV V +G AN + Q VE + K+ L + L Q + VLIFC + M Sbjct: 219 PRSGPTVLVLAPTRELATQILEEAVKFGRSSR------ISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRM 407 HSP 2 Score: 24.2534 bits (51), Expect = 6.614e-29 Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A A+HG K Q ERE +S Sbjct: 421 ASAIHGDKSQSEREKVLS 438
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_SCHPO (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe GN=prp28 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 6.631e-29 Identity = 69/205 (33.66%), Postives = 111/205 (54.15%), Query Frame = 3 Query: 72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-------------------KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK----IVYLLECLQKTPPPVLIF 617 GP+ +++ P+RELA+Q +F P+ R + +GG Q + +G HIVVATPGRL D L ++ L C Y+ +DEADR++D+GFEDD+ ++ ++RQT++FSAT+P ++ N A+S L++PV + +G G A V Q VE + ++K + +LE + PP++IF Sbjct: 325 GPYAVVLAPTRELAQQIQVEGNKFAEPL------GFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILES-NRFSPPIIIF 522 HSP 2 Score: 26.1794 bits (56), Expect = 6.631e-29 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAI 726 AV +HG K QE+RE AI Sbjct: 543 AVTLHGSKSQEQRERAI 559
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.633e-29 Identity = 71/193 (36.79%), Postives = 112/193 (58.03%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLL-ECLQKTPPPVLIFCENR 629 G+GP CL++ P+RELA+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L +NVG +AN +++Q V+ +++ K++ L+ E + + +IF E + Sbjct: 163 GDGPICLVLAPTRELAQQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETK 349 HSP 2 Score: 22.7126 bits (47), Expect = 6.633e-29 Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+ +HG K Q ER++ ++ Sbjct: 366 AMCIHGDKSQPERDWVLN 383
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.633e-29 Identity = 71/193 (36.79%), Postives = 112/193 (58.03%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLL-ECLQKTPPPVLIFCENR 629 G+GP CL++ P+RELA+Q +V + + R L++ GG Q+ ++RGV I +ATPGRL D L K NL C YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L +NVG +AN +++Q V+ +++ K++ L+ E + + +IF E + Sbjct: 163 GDGPICLVLAPTRELAQQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETK 349 HSP 2 Score: 22.7126 bits (47), Expect = 6.633e-29 Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+ +HG K Q ER++ ++ Sbjct: 366 AMCIHGDKSQPERDWVLN 383
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP1_YEAST (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae GN=DBP1 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 6.638e-29 Identity = 74/198 (37.37%), Postives = 110/198 (55.56%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTN 653 P L++ P+RELA Q +E +F +R + GG + +Q+ V RG ++VATPGRL D+L + K++L N +YL LDEADR++D+GFE IR + + RQTL+FSAT P IQ+ AR L + ++VGR G+ + ++ Q + YV K LL+ L + LIF E + M T+ Sbjct: 238 PSALVLAPTRELATQIFEEARKFTYRSW------VRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTD 429 HSP 2 Score: 26.9498 bits (58), Expect = 6.638e-29 Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAISS 732 ++ +A A+HG + Q ERE A+S+ Sbjct: 433 MQNFKATAIHGDRTQAERERALSA 456
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP1_YEAS7 (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 6.638e-29 Identity = 74/198 (37.37%), Postives = 110/198 (55.56%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTN 653 P L++ P+RELA Q +E +F +R + GG + +Q+ V RG ++VATPGRL D+L + K++L N +YL LDEADR++D+GFE IR + + RQTL+FSAT P IQ+ AR L + ++VGR G+ + ++ Q + YV K LL+ L + LIF E + M T+ Sbjct: 238 PSALVLAPTRELATQIFEEARKFTYRSW------VRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTD 429 HSP 2 Score: 26.9498 bits (58), Expect = 6.638e-29 Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAISS 732 ++ +A A+HG + Q ERE A+S+ Sbjct: 433 MQNFKATAIHGDRTQAERERALSA 456 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |