FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.922e-29
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR---AGAANLDVIQEV--EYVKQEAKIVYLLECLQKTPPPVLIF 617
            G+GP  L++ P+RELA Q  +   +F    +      +R     GGV    Q+  + RGV IV+ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P ++Q  A   L   + VN+G    + + N+  + EV  EY K++  + +L   ++      LIF
Sbjct:  187 GDGPIVLVLAPTRELAVQIQQECSKFGKSSK------IRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHLETVMENKESKCLIF 369          

HSP 2 Score: 25.409 bits (54), Expect = 3.922e-29
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+A+HG K Q+ER++ ++
Sbjct:  390 ALAIHGDKQQQERDWVLN 407          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPCL (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus GN=prp5 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.052e-29
Identity = 70/176 (39.77%), Postives = 102/176 (57.95%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            EGP  LI+ P+RELA Q ++  + FL  +      +LR +   GG  ++ Q+  +KRG  IVV TPGR+ D+LA     + N R   Y+ LDEADR+ D+GFE  + ++  + +  RQT+LFSAT P  ++  AR AL KP+ + VG       ++ Q VE   ++ K V LLE L
Sbjct:  629 EGPIGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEIL 798          

HSP 2 Score: 23.483 bits (49), Expect = 5.052e-29
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAI 726
            +++HGGKDQ +R+  I
Sbjct:  837 MSIHGGKDQIDRDSTI 852          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_COCIM (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis GN=PRP5 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.577e-29
Identity = 69/176 (39.20%), Postives = 100/176 (56.82%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            EGP  LI+ P+RELA Q ++  + FL  +      +LR +   GG  ++ Q+  +KRG  I+V TPGR+ D+LA     + N R   Y+ LDEADR+ D+GFE  + ++  + +  RQT+LFSAT P  ++  AR  L KPV + VG       ++ Q VE   +  K V LLE L
Sbjct:  631 EGPVGLIMTPTRELATQIHKECKPFLKAL------NLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPSRQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELL 800          

HSP 2 Score: 23.8682 bits (50), Expect = 6.577e-29
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAI 726
            +++HGGKDQ +R+  I
Sbjct:  839 MSIHGGKDQVDRDSTI 854          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 6.601e-29
Identity = 72/204 (35.29%), Postives = 109/204 (53.43%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVK-------QEAKIVYLLECL-----QKTPPPVLIFCENRL 632
            G+GP  LI+ P+RELA Q ++ +  F   +      ++ +  C GG  + SQ+  +K+G  I+V TPGR+ D+LA       NL    YL LDEADR+ D+GFE  + +VF   +  RQT+LFSAT P K++  A+  L  P+ + VG       ++ Q+VE  +       +EAK   LL  L     +     +LIF E ++
Sbjct:  388 GDGPIGLIMTPTRELALQIHKELNHFTKKL------NISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQTVLFSATFPRKMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKLLSTLNDYGDKDAECKILIFVEKQI 585          

HSP 2 Score: 29.261 bits (64), Expect = 6.601e-29
Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 1
Query:  664 ERIEAVAVHGGKDQEEREYAI 726
            E+   +A+HGGKDQ +R++AI
Sbjct:  597 EKYPCLAIHGGKDQIDRKHAI 617          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.614e-29
Identity = 74/195 (37.95%), Postives = 106/195 (54.36%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENRLM 635
            P  GP  L++ P+RELA Q  E   +F    R      + +    GG     QL  + RGV +VVATPGRL D+L  ++++L    YL LDEADR++D+GFE  IR++      +RQTL+++AT P +++  A   LV PV V +G      AN  + Q VE +    K+  L + L  Q +   VLIFC  + M
Sbjct:  219 PRSGPTVLVLAPTRELATQILEEAVKFGRSSR------ISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRM 407          

HSP 2 Score: 24.2534 bits (51), Expect = 6.614e-29
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A A+HG K Q ERE  +S
Sbjct:  421 ASAIHGDKSQSEREKVLS 438          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_SCHPO (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Schizosaccharomyces pombe GN=prp28 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.631e-29
Identity = 69/205 (33.66%), Postives = 111/205 (54.15%), Query Frame = 3
Query:   72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-------------------KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK----IVYLLECLQKTPPPVLIF 617
            GP+ +++ P+RELA+Q      +F  P+        R +  +GG     Q   + +G HIVVATPGRL D L ++   L  C Y+ +DEADR++D+GFEDD+ ++                        ++RQT++FSAT+P ++ N A+S L++PV + +G  G A   V Q VE +  ++K    +  +LE   +  PP++IF
Sbjct:  325 GPYAVVLAPTRELAQQIQVEGNKFAEPL------GFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILES-NRFSPPIIIF 522          

HSP 2 Score: 26.1794 bits (56), Expect = 6.631e-29
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            AV +HG K QE+RE AI
Sbjct:  543 AVTLHGSKSQEQRERAI 559          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.633e-29
Identity = 71/193 (36.79%), Postives = 112/193 (58.03%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLL-ECLQKTPPPVLIFCENR 629
            G+GP CL++ P+RELA+Q  +V + +    R      L++    GG     Q+  ++RGV I +ATPGRL D L   K NL  C YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L     +NVG    +AN +++Q V+     +++ K++ L+ E + +     +IF E +
Sbjct:  163 GDGPICLVLAPTRELAQQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETK 349          

HSP 2 Score: 22.7126 bits (47), Expect = 6.633e-29
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+ +HG K Q ER++ ++
Sbjct:  366 AMCIHGDKSQPERDWVLN 383          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.633e-29
Identity = 71/193 (36.79%), Postives = 112/193 (58.03%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYV---KQEAKIVYLL-ECLQKTPPPVLIFCENR 629
            G+GP CL++ P+RELA+Q  +V + +    R      L++    GG     Q+  ++RGV I +ATPGRL D L   K NL  C YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L     +NVG    +AN +++Q V+     +++ K++ L+ E + +     +IF E +
Sbjct:  163 GDGPICLVLAPTRELAQQVQQVADDYGKCSR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETK 349          

HSP 2 Score: 22.7126 bits (47), Expect = 6.633e-29
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+ +HG K Q ER++ ++
Sbjct:  366 AMCIHGDKSQPERDWVLN 383          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP1_YEAST (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae GN=DBP1 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 6.638e-29
Identity = 74/198 (37.37%), Postives = 110/198 (55.56%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTN 653
            P  L++ P+RELA Q +E   +F           +R  +  GG  + +Q+  V RG  ++VATPGRL D+L + K++L N +YL LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ+ AR  L   + ++VGR G+ + ++ Q + YV    K   LL+ L      + LIF E + M    T+
Sbjct:  238 PSALVLAPTRELATQIFEEARKFTYRSW------VRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTD 429          

HSP 2 Score: 26.9498 bits (58), Expect = 6.638e-29
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            ++  +A A+HG + Q ERE A+S+
Sbjct:  433 MQNFKATAIHGDRTQAERERALSA 456          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP1_YEAS7 (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.638e-29
Identity = 74/198 (37.37%), Postives = 110/198 (55.56%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTN 653
            P  L++ P+RELA Q +E   +F           +R  +  GG  + +Q+  V RG  ++VATPGRL D+L + K++L N +YL LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ+ AR  L   + ++VGR G+ + ++ Q + YV    K   LL+ L      + LIF E + M    T+
Sbjct:  238 PSALVLAPTRELATQIFEEARKFTYRSW------VRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTD 429          

HSP 2 Score: 26.9498 bits (58), Expect = 6.638e-29
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            ++  +A A+HG + Q ERE A+S+
Sbjct:  433 MQNFKATAIHGDRTQAERERALSA 456          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_YARLI3.922e-2938.10ATP-dependent RNA helicase DBP2 OS=Yarrowia lipoly... [more]
PRP5_ASPCL5.052e-2939.77Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_COCIM6.577e-2939.20Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_DEBHA6.601e-2935.29Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
RH40_ORYSJ6.614e-2937.95DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]
PRP28_SCHPO6.631e-2933.66Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DDX17_MOUSE6.633e-2936.79Probable ATP-dependent RNA helicase DDX17 OS=Mus m... [more]
DDX17_HUMAN6.633e-2936.79Probable ATP-dependent RNA helicase DDX17 OS=Homo ... [more]
DBP1_YEAST6.638e-2937.37ATP-dependent RNA helicase DBP1 OS=Saccharomyces c... [more]
DBP1_YEAS76.638e-2937.37ATP-dependent RNA helicase DBP1 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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