FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX5_PONAB (Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.638e-29 Identity = 69/193 (35.75%), Postives = 113/193 (58.55%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLL-ECLQKTPPPVLIFCENR 629 G+GP CL++ P+RELA+Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L + +N+G +AN +++Q V+ V+++ K++ L+ E + + ++F E + Sbjct: 165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETK 351 HSP 2 Score: 23.8682 bits (50), Expect = 6.638e-29 Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+ +HG K Q+ER++ ++ Sbjct: 368 AMGIHGDKSQQERDWVLN 385
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX5_MOUSE (Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.638e-29 Identity = 69/193 (35.75%), Postives = 113/193 (58.55%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLL-ECLQKTPPPVLIFCENR 629 G+GP CL++ P+RELA+Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L + +N+G +AN +++Q V+ V+++ K++ L+ E + + ++F E + Sbjct: 165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETK 351 HSP 2 Score: 23.8682 bits (50), Expect = 6.638e-29 Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+ +HG K Q+ER++ ++ Sbjct: 368 AMGIHGDKSQQERDWVLN 385
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX5_HUMAN (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.638e-29 Identity = 69/193 (35.75%), Postives = 113/193 (58.55%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLL-ECLQKTPPPVLIFCENR 629 G+GP CL++ P+RELA+Q +V ++ R L++ GG Q+ ++RGV I +ATPGRL D L K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L + +N+G +AN +++Q V+ V+++ K++ L+ E + + ++F E + Sbjct: 165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETK 351 HSP 2 Score: 23.8682 bits (50), Expect = 6.638e-29 Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+ +HG K Q+ER++ ++ Sbjct: 368 AMGIHGDKSQQERDWVLN 385
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 6.649e-29 Identity = 76/201 (37.81%), Postives = 105/201 (52.24%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR---AGAANLDVIQEV--EYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650 PG+GP L++ P+RELA Q +F R +R GGV Q+ + RG IV+ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L P+ V VG + + N+ I EV ++ K++ YL Q LIF + M T Sbjct: 183 PGDGPIVLVLAPTRELAVQIQTECSKFGHSSR------IRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDIT 377 HSP 2 Score: 26.5646 bits (57), Expect = 6.649e-29 Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAI 726 A+A+HG KDQ ER++ + Sbjct: 387 ALAIHGDKDQRERDWVL 403
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 6.649e-29 Identity = 76/201 (37.81%), Postives = 105/201 (52.24%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR---AGAANLDVIQEV--EYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650 PG+GP L++ P+RELA Q +F R +R GGV Q+ + RG IV+ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L P+ V VG + + N+ I EV ++ K++ YL Q LIF + M T Sbjct: 183 PGDGPIVLVLAPTRELAVQIQTECSKFGHSSR------IRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDIT 377 HSP 2 Score: 26.5646 bits (57), Expect = 6.649e-29 Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAI 726 A+A+HG KDQ ER++ + Sbjct: 387 ALAIHGDKDQRERDWVL 403
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPFU (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus fumigatus GN=prp5 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 8.562e-29 Identity = 69/176 (39.20%), Postives = 102/176 (57.95%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 EGP LI+ P+RELA Q ++ + FL + +LR + GG ++ Q+ +KRG IVV TPGR+ D+LA + N R Y+ LDEADR+ D+GFE + ++ + + RQT+LFSAT P ++ AR +L KP+ + VG ++ Q VE ++ K V LLE L Sbjct: 647 EGPIGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEIL 816 HSP 2 Score: 23.483 bits (49), Expect = 8.562e-29 Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAI 726 +++HGGKDQ +R+ I Sbjct: 855 MSIHGGKDQIDRDSTI 870
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_NEOFI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp5 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 8.563e-29 Identity = 69/176 (39.20%), Postives = 102/176 (57.95%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 EGP LI+ P+RELA Q ++ + FL + +LR + GG ++ Q+ +KRG IVV TPGR+ D+LA + N R Y+ LDEADR+ D+GFE + ++ + + RQT+LFSAT P ++ AR +L KP+ + VG ++ Q VE ++ K V LLE L Sbjct: 629 EGPIGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEIL 798 HSP 2 Score: 23.483 bits (49), Expect = 8.563e-29 Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAI 726 +++HGGKDQ +R+ I Sbjct: 837 MSIHGGKDQIDRDSTI 852
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_VANPO (ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP2 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 8.686e-29 Identity = 71/177 (40.11%), Postives = 101/177 (57.06%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQ 590 PG+GP L++ P+RELA Q + +F + R +R GGV Q+ + RG IV+ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L P+ V +G +A+ ++ Q VE V K LL+ L+ Sbjct: 183 PGDGPIVLVLAPTRELAVQIQKECSKFGSSSR------IRNSCVYGGVPRGQQIRELSRGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAHDYLNDPIQVQIGSLELSASHNITQLVEVVSDFEKRDRLLKHLE 353 HSP 2 Score: 26.5646 bits (57), Expect = 8.686e-29 Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAI 726 A+A+HG KDQ ER++ + Sbjct: 387 ALAIHGDKDQRERDWVL 403
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_CHAGB (ATP-dependent RNA helicase DED1 OS=Chaetomium globosum GN=DED1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.690e-29 Identity = 82/219 (37.44%), Postives = 124/219 (56.62%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716 P LI+ P+REL Q YE +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE IR + QRQTL+FSAT P IQ A+ L V ++VGR G+ + ++ Q+VEYV+ K LL+ L + LIF E + M + ++ ++ + +R+ RER Sbjct: 283 PTALILAPTRELVSQIYEEARKF------AYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 495
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_CHAGB (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum GN=PRP5 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.117e-28 Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 +G LI+ P+REL Q Y + F ++ LR + GG ++ Q+ +KRG I+VATPGR+ D+LA NL YL LDEADR+ D+GFE + ++F++ + RQT+LFSATMP I + L +PV + VG ++ Q VE + + K V LLE L Sbjct: 501 DGAIALIMTPTRELCTQIYSDLLPFAKALK------LRAIAAYGGNAIKDQIAELKRGAEIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTILFSATMPRIIDALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKFVRLLELL 670 HSP 2 Score: 27.335 bits (59), Expect = 1.117e-28 Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAIS 729 +++HGGKDQE+R IS Sbjct: 707 MSIHGGKDQEDRNSTIS 723 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |