FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX5_PONAB (Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.638e-29
Identity = 69/193 (35.75%), Postives = 113/193 (58.55%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLL-ECLQKTPPPVLIFCENR 629
            G+GP CL++ P+RELA+Q  +V  ++    R      L++    GG     Q+  ++RGV I +ATPGRL D L   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L   + +N+G    +AN +++Q V+    V+++ K++ L+ E + +     ++F E +
Sbjct:  165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETK 351          

HSP 2 Score: 23.8682 bits (50), Expect = 6.638e-29
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+ +HG K Q+ER++ ++
Sbjct:  368 AMGIHGDKSQQERDWVLN 385          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX5_MOUSE (Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.638e-29
Identity = 69/193 (35.75%), Postives = 113/193 (58.55%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLL-ECLQKTPPPVLIFCENR 629
            G+GP CL++ P+RELA+Q  +V  ++    R      L++    GG     Q+  ++RGV I +ATPGRL D L   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L   + +N+G    +AN +++Q V+    V+++ K++ L+ E + +     ++F E +
Sbjct:  165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETK 351          

HSP 2 Score: 23.8682 bits (50), Expect = 6.638e-29
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+ +HG K Q+ER++ ++
Sbjct:  368 AMGIHGDKSQQERDWVLN 385          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX5_HUMAN (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.638e-29
Identity = 69/193 (35.75%), Postives = 113/193 (58.55%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLL-ECLQKTPPPVLIFCENR 629
            G+GP CL++ P+RELA+Q  +V  ++    R      L++    GG     Q+  ++RGV I +ATPGRL D L   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L   + +N+G    +AN +++Q V+    V+++ K++ L+ E + +     ++F E +
Sbjct:  165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETK 351          

HSP 2 Score: 23.8682 bits (50), Expect = 6.638e-29
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+ +HG K Q+ER++ ++
Sbjct:  368 AMGIHGDKSQQERDWVLN 385          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.649e-29
Identity = 76/201 (37.81%), Postives = 105/201 (52.24%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR---AGAANLDVIQEV--EYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650
            PG+GP  L++ P+RELA Q      +F    R      +R     GGV    Q+  + RG  IV+ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L  P+ V VG    + + N+  I EV  ++ K++    YL    Q      LIF   + M    T
Sbjct:  183 PGDGPIVLVLAPTRELAVQIQTECSKFGHSSR------IRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDIT 377          

HSP 2 Score: 26.5646 bits (57), Expect = 6.649e-29
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+A+HG KDQ ER++ +
Sbjct:  387 ALAIHGDKDQRERDWVL 403          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.649e-29
Identity = 76/201 (37.81%), Postives = 105/201 (52.24%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR---AGAANLDVIQEV--EYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650
            PG+GP  L++ P+RELA Q      +F    R      +R     GGV    Q+  + RG  IV+ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L  P+ V VG    + + N+  I EV  ++ K++    YL    Q      LIF   + M    T
Sbjct:  183 PGDGPIVLVLAPTRELAVQIQTECSKFGHSSR------IRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDIT 377          

HSP 2 Score: 26.5646 bits (57), Expect = 6.649e-29
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+A+HG KDQ ER++ +
Sbjct:  387 ALAIHGDKDQRERDWVL 403          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPFU (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus fumigatus GN=prp5 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.562e-29
Identity = 69/176 (39.20%), Postives = 102/176 (57.95%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            EGP  LI+ P+RELA Q ++  + FL  +      +LR +   GG  ++ Q+  +KRG  IVV TPGR+ D+LA     + N R   Y+ LDEADR+ D+GFE  + ++  + +  RQT+LFSAT P  ++  AR +L KP+ + VG       ++ Q VE   ++ K V LLE L
Sbjct:  647 EGPIGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEIL 816          

HSP 2 Score: 23.483 bits (49), Expect = 8.562e-29
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAI 726
            +++HGGKDQ +R+  I
Sbjct:  855 MSIHGGKDQIDRDSTI 870          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_NEOFI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp5 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.563e-29
Identity = 69/176 (39.20%), Postives = 102/176 (57.95%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            EGP  LI+ P+RELA Q ++  + FL  +      +LR +   GG  ++ Q+  +KRG  IVV TPGR+ D+LA     + N R   Y+ LDEADR+ D+GFE  + ++  + +  RQT+LFSAT P  ++  AR +L KP+ + VG       ++ Q VE   ++ K V LLE L
Sbjct:  629 EGPIGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEIL 798          

HSP 2 Score: 23.483 bits (49), Expect = 8.563e-29
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAI 726
            +++HGGKDQ +R+  I
Sbjct:  837 MSIHGGKDQIDRDSTI 852          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_VANPO (ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.686e-29
Identity = 71/177 (40.11%), Postives = 101/177 (57.06%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQ 590
            PG+GP  L++ P+RELA Q  +   +F +  R      +R     GGV    Q+  + RG  IV+ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L  P+ V +G    +A+ ++ Q VE V    K   LL+ L+
Sbjct:  183 PGDGPIVLVLAPTRELAVQIQKECSKFGSSSR------IRNSCVYGGVPRGQQIRELSRGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAHDYLNDPIQVQIGSLELSASHNITQLVEVVSDFEKRDRLLKHLE 353          

HSP 2 Score: 26.5646 bits (57), Expect = 8.686e-29
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+A+HG KDQ ER++ +
Sbjct:  387 ALAIHGDKDQRERDWVL 403          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_CHAGB (ATP-dependent RNA helicase DED1 OS=Chaetomium globosum GN=DED1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.690e-29
Identity = 82/219 (37.44%), Postives = 124/219 (56.62%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFD----HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  LI+ P+REL  Q YE   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR +          QRQTL+FSAT P  IQ  A+  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L      + LIF E + M  + ++    ++  +     +R+ RER
Sbjct:  283 PTALILAPTRELVSQIYEEARKF------AYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 495          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_CHAGB (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum GN=PRP5 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.117e-28
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK---MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            +G   LI+ P+REL  Q Y  +  F   ++      LR +   GG  ++ Q+  +KRG  I+VATPGR+ D+LA       NL    YL LDEADR+ D+GFE  + ++F++ +  RQT+LFSATMP  I    +  L +PV + VG       ++ Q VE + +  K V LLE L
Sbjct:  501 DGAIALIMTPTRELCTQIYSDLLPFAKALK------LRAIAAYGGNAIKDQIAELKRGAEIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTILFSATMPRIIDALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKFVRLLELL 670          

HSP 2 Score: 27.335 bits (59), Expect = 1.117e-28
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAIS 729
            +++HGGKDQE+R   IS
Sbjct:  707 MSIHGGKDQEDRNSTIS 723          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX5_PONAB6.638e-2935.75Probable ATP-dependent RNA helicase DDX5 OS=Pongo ... [more]
DDX5_MOUSE6.638e-2935.75Probable ATP-dependent RNA helicase DDX5 OS=Mus mu... [more]
DDX5_HUMAN6.638e-2935.75Probable ATP-dependent RNA helicase DDX5 OS=Homo s... [more]
DBP2_YEAST6.649e-2937.81ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS76.649e-2937.81ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
PRP5_ASPFU8.562e-2939.20Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_NEOFI8.563e-2939.20Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DBP2_VANPO8.686e-2940.11ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma... [more]
DED1_CHAGB9.690e-2937.44ATP-dependent RNA helicase DED1 OS=Chaetomium glob... [more]
PRP5_CHAGB1.117e-2838.64Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
back to top