FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_CANAL (ATP-dependent RNA helicase DED1 OS=Candida albicans GN=DED1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.124e-28
Identity = 74/193 (38.34%), Postives = 112/193 (58.03%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPD-LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLM 635
            P  L++ P+REL  Q YE  ++F        Y   +R  +  GG D+  Q+  + RG  ++VATPGRLKD+L + K++L N RYL LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q++ YV+ + K   +L+ L      + ++F E + M
Sbjct:  270 PTILVMAPTRELVSQIYEESKKF-------SYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANENGLTIVFTETKRM 455          

HSP 2 Score: 23.8682 bits (50), Expect = 1.124e-28
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A A+HG + Q ERE A+++
Sbjct:  470 ATAIHGDRSQYEREKALAA 488          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_VANPO (ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.266e-28
Identity = 78/219 (35.62%), Postives = 124/219 (56.62%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  L++ P+RELA Q Y+  ++F           +R  +  GG D+ SQ+  + RG  ++VATPGRL D+L + +++L N +YL LDEADR++D+GFE  IR++ D        +RQTL+FSAT P  IQ+ AR  L   + ++VG+ G+ + ++ Q + YV+   K   LL+ L  +   + LIF E + M    T+    +D  +     +R+  ER
Sbjct:  244 PTALVLAPTRELATQIYDEAKKFTYRSW------VRPTVVYGGSDIGSQIRDLSRGCDLLVATPGRLSDLLERGRVSLANVKYLVLDEADRMLDMGFEPQIRQIVDGCDMPPVGERQTLMFSATFPDDIQHLARDFLSDYIFLSVGKVGSTSENITQRILYVEDMDKKSTLLDLLSASNDGLTLIFVETKRMADELTDFLIMQDFRATAIHGDRTQSER 456          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.463e-28
Identity = 72/192 (37.50%), Postives = 112/192 (58.33%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLM 635
            P  L++ P+REL  Q Y+  ++F      A    +R  +  GG D+ +Q+  + RG  ++VATPGRLKD+L + +++L N +YL LDEADR++D+GFE  IR +           RQTL+FSAT P  IQ  AR  L   + ++VGR G+ + ++ Q+V YV+ E K   +L+ L      + ++F E + M
Sbjct:  259 PTILVMAPTRELVSQIYDESKKF------AYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDEEKKSVILDLLNANSEGLTIVFTETKRM 444          

HSP 2 Score: 23.8682 bits (50), Expect = 1.463e-28
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A A+HG + Q ERE A+++
Sbjct:  459 ATAIHGDRSQYEREKALAA 477          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_PICST (ATP-dependent RNA helicase DED1 OS=Pichia stipitis GN=DED1 PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.464e-28
Identity = 72/192 (37.50%), Postives = 112/192 (58.33%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLM 635
            P  L++ P+REL  Q Y+  ++F      A    ++  +  GG D+  Q+  + +G  ++VATPGRLKD+L + +++L N +YL LDEADR++D+GFE  IR +           RQTL+FSAT PT IQ  AR  L   + ++VGR G+ + ++ Q++ YV+ E K   LL+ L      + +IF E + M
Sbjct:  252 PTILVMAPTRELVSQIYDEAKKF------AYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSAGDAGLTIIFTETKRM 437          

HSP 2 Score: 23.8682 bits (50), Expect = 1.464e-28
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A A+HG + Q ERE A+++
Sbjct:  452 ATAIHGDRSQYEREKALAA 470          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_PICGU (ATP-dependent RNA helicase DED1 OS=Pichia guilliermondii GN=DED1 PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.464e-28
Identity = 73/193 (37.82%), Postives = 112/193 (58.03%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPD-LRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLM 635
            P  L++ P+REL  Q +E  ++F        Y   +R  +  GG D+ +Q+  + RG  ++VATPGRLKD+L + +++L N +YL LDEADR++D+GFE  IR +           RQTL+FSAT P  IQ  AR  L   + ++VGR G+ + ++ Q+V YV+ + K   LL+ L      + +IF E + M
Sbjct:  253 PTALVMAPTRELVSQIFEEAKKF-------SYRSWVRPCVVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKSVLLDLLSANDNGLTIIFTETKRM 438          

HSP 2 Score: 23.8682 bits (50), Expect = 1.464e-28
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A A+HG + Q ERE A+++
Sbjct:  453 ATAIHGDRSQYEREKALAA 471          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX5_MACFA (Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.907e-28
Identity = 69/193 (35.75%), Postives = 113/193 (58.55%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLL-ECLQKTPPPVLIFCENR 629
            G+GP CL++ P+RELA+Q  +V  ++    R      L++    GG     Q+  ++RGV I +ATPGRL D L   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L   + +N+G    +AN +++Q V+    V+++ K++ L+ E + +     ++F E +
Sbjct:  165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETK 351          

HSP 2 Score: 22.3274 bits (46), Expect = 1.907e-28
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+ +HG K Q+ER + ++
Sbjct:  368 AMGIHGDKSQQERGWVLN 385          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_PICGU (ATP-dependent RNA helicase DBP2 OS=Pichia guilliermondii GN=DBP2 PE=3 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.910e-28
Identity = 71/194 (36.60%), Postives = 101/194 (52.06%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            PG+GP  L++ P+RELA Q  +   +F    R      +R     GG     Q+  + RGV I +ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P ++Q   R  L  P+ V +G    A    I ++     E+ K++  + +L          VLIF   +
Sbjct:  195 PGDGPIVLVLAPTRELAVQIQQECSKFGASSR------IRNTCIYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQIVEVLSEFEKRDRLVKHLETATADKEAKVLIFSSTK 382          

HSP 2 Score: 24.2534 bits (51), Expect = 1.910e-28
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+A+HG K Q ER++ +
Sbjct:  399 ALAIHGDKQQNERDWVL 415          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.911e-28
Identity = 78/200 (39.00%), Postives = 106/200 (53.00%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFT 650
            PG+GP  LI+ P+RELA Q      +F    R      +R     GG     Q+  ++RGV I VATPGRL DML   K NL    YL +DEADR++D+GFE  IR++    +  RQTLLFSAT P ++Q  A   L   + VN+G     AN +V Q VE      + +K++  LE + +    VLIF   + +    T
Sbjct:  180 PGDGPIVLILAPTRELAVQIQTEATKFGQSSR------IRNTAIYGGAPKGPQIRDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQENGKVLIFVATKRVADDLT 373          

HSP 2 Score: 24.2534 bits (51), Expect = 1.911e-28
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+A+HG K Q ER++ ++
Sbjct:  383 ALAIHGDKQQAERDWVLA 400          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_YARLI (ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica GN=DED1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.159e-28
Identity = 77/219 (35.16%), Postives = 123/219 (56.16%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  L++ P+REL  Q Y+  ++F      A    +R  +  GG D+  Q+  ++RG  ++VA PGRL D++ + K++L+N +YL LDEADR++D+GFE  IR +          +RQTL+FSAT P  IQ  AR  L   + ++VGR G+ + ++ Q+VEYV+   KI  LL+ L      + L+F E +       ++   +D  +     +RS R+R
Sbjct:  245 PTALVLAPTRELVSQIYDEAKKF------AYRSWVRPCVVYGGADIGEQMRNIERGCDLLVAAPGRLVDLIDRGKVSLENIKYLVLDEADRMLDMGFEPQIRAIVQGSGMPDVNERQTLMFSATFPRNIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDGDKISALLDILSAAGKGLTLVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDR 457          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_SCHPO (ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe GN=ded1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.159e-28
Identity = 79/220 (35.91%), Postives = 122/220 (55.45%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  LI+ P+REL  Q +E   +F           +R     GG D+R+Q+  + +G  ++ ATPGRL D++ + +++L N ++L LDEADR++D+GFE  IR + +        +RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+V +V+   K  YLL+ L   PP    LIF E + M  T T+     +  +     +R+ RER
Sbjct:  256 PTTLILAPTRELVCQIHEESRKFCYRSW------VRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRER 469          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DED1_CANAL1.124e-2838.34ATP-dependent RNA helicase DED1 OS=Candida albican... [more]
DED1_VANPO1.266e-2835.62ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma... [more]
DED1_LODEL1.463e-2837.50ATP-dependent RNA helicase DED1 OS=Lodderomyces el... [more]
DED1_PICST1.464e-2837.50ATP-dependent RNA helicase DED1 OS=Pichia stipitis... [more]
DED1_PICGU1.464e-2837.82ATP-dependent RNA helicase DED1 OS=Pichia guillier... [more]
DDX5_MACFA1.907e-2835.75Probable ATP-dependent RNA helicase DDX5 OS=Macaca... [more]
DBP2_PICGU1.910e-2836.60ATP-dependent RNA helicase DBP2 OS=Pichia guillier... [more]
DBP2_CRYNE1.911e-2839.00ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
DED1_YARLI2.159e-2835.16ATP-dependent RNA helicase DED1 OS=Yarrowia lipoly... [more]
DED1_SCHPO2.159e-2835.91ATP-dependent RNA helicase ded1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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