FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_COCIM (ATP-dependent RNA helicase DED1 OS=Coccidioides immitis GN=DED1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.159e-28
Identity = 81/219 (36.99%), Postives = 123/219 (56.16%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ----RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  LI+ P+REL  Q Y+   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L      + LIF E + M  + +     ++  +     +R+ RER
Sbjct:  263 PTSLILAPTRELVSQIYDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRER 475          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_NEUCR (Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora crassa GN=prp-5 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.460e-28
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK---KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            +G   LI+ P+REL  Q Y  ++ F   ++      LR +   GG  ++ Q+  +KRG  I+VATPGRL D+LA    +  NL    YL LDEADR+ D+GFE  + ++F++ +  RQT+LFSATMP  I    +  L  PV + VG       ++ Q VE + +  K   LLE L
Sbjct:  633 DGAIALIMTPTRELCTQIYSDLQPFAKALK------LRVVAAYGGNAIKDQIAELKRGAEIIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTILFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRLLELL 802          

HSP 2 Score: 27.335 bits (59), Expect = 2.460e-28
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAIS 729
            +++HGGKDQE+R   IS
Sbjct:  839 MSIHGGKDQEDRNSTIS 855          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 80/219 (36.53%), Postives = 124/219 (56.62%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  LI+ P+REL  Q Y+   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ  AR  L   + ++VGR G+ + ++ Q+VEYV+   K   LL+ L      + LIF E + M  + ++    ++  +     +R+ RER
Sbjct:  280 PTALILAPTRELVSQIYDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPKVNDRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 492          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_BOTFB (ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) GN=ded1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 81/219 (36.99%), Postives = 124/219 (56.62%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  LI+ P+REL  Q Y+   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L      + LIF E + M  + ++    ++  +     +R+ RER
Sbjct:  272 PTSLILAPTRELVSQIYDESRKF------AYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 484          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            GEGP  +I+ P+RELA Q  +  ++F   +       LR +   GG  +  Q+  +KRG  I+V TPGR+ DMLA     + N R   Y+ LDEADR+ D+GFE  +  + D+ +  RQT++FSAT P  ++  AR  L KP+ V VG       DV Q+V  +++E K + LLE L
Sbjct:  443 GEGPIAVIMTPTRELALQITKECKKFSKTL------GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_MOUSE (Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            GEGP  +I+ P+RELA Q  +  ++F   +       LR +   GG  +  Q+  +KRG  I+V TPGR+ DMLA     + N R   Y+ LDEADR+ D+GFE  +  + D+ +  RQT++FSAT P  ++  AR  L KP+ V VG       DV Q+V  +++E K + LLE L
Sbjct:  443 GEGPIAVIMTPTRELALQITKECKKFSKTL------GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_HUMAN (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            GEGP  +I+ P+RELA Q  +  ++F   +       LR +   GG  +  Q+  +KRG  I+V TPGR+ DMLA     + N R   Y+ LDEADR+ D+GFE  +  + D+ +  RQT++FSAT P  ++  AR  L KP+ V VG       DV Q+V  +++E K + LLE L
Sbjct:  443 GEGPIAVIMTPTRELALQITKECKKFSKTL------GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPTN (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.203e-28
Identity = 70/176 (39.77%), Postives = 101/176 (57.39%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            EGP  LI+ P+RELA Q ++  + FL  +      +LR +   GG  ++ Q+  +KRG  IVV TPGR+ D+LA     + N R   Y+ LDEADR+ D+GFE  + ++  + +  RQT+LFSAT P  ++  AR  L KPV + VG       ++ Q VE   ++ K V LLE L
Sbjct:  621 EGPIGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQTVLFSATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELL 790          

HSP 2 Score: 23.483 bits (49), Expect = 3.203e-28
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAI 726
            +++HGGKDQ +R+  I
Sbjct:  829 MSIHGGKDQIDRDSTI 844          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_DEBHA (ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii GN=DED1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.231e-28
Identity = 71/192 (36.98%), Postives = 114/192 (59.38%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLM 635
            P  L++ P+REL  Q ++  ++F      A    +R  +  GG D+  Q+  ++RG  ++VATPGRLKD+L + +++L + +YL LDEADR++D+GFE  IR +           RQTL+FSAT P +IQ  AR  L + + ++VGR G+ + ++ Q++ YV+ E K   LL+ L      + +IF E + M
Sbjct:  240 PTALVMAPTRELVSQIFDEAKKF------AYRSWVRPSVVYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSANDNGLTIIFTETKRM 425          

HSP 2 Score: 23.8682 bits (50), Expect = 3.231e-28
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAISS 732
            A A+HG + Q ERE A+++
Sbjct:  440 ATAIHGDRSQYEREKALAA 458          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_ASHGO (ATP-dependent RNA helicase DED1 OS=Ashbya gossypii GN=DED1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.231e-28
Identity = 70/198 (35.35%), Postives = 116/198 (58.59%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTN 653
            P  +++ P+RELA Q ++  ++F           ++  +  GG D+R Q+  ++RG  ++VATPGRL D+L + K++L + +YL LDEADR++D+GFE  IR + +         RQTL+FSAT PT IQ+ A   L   + ++VGR G+ + ++ Q+V +V+   K   LL+ L  +   + L+F E + M    T+
Sbjct:  229 PTAVVLAPTRELATQIFDEAKKFTYRSW------VKPCVVYGGADIRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDMPTVENRQTLMFSATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLLDLLAASDGGLTLVFVETKRMADALTD 420          

HSP 2 Score: 25.7942 bits (55), Expect = 3.231e-28
Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAIS 729
            ++ + A A+HG + Q ERE A++
Sbjct:  424 MQNLSATAIHGDRTQAERERALA 446          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DED1_COCIM2.159e-2836.99ATP-dependent RNA helicase DED1 OS=Coccidioides im... [more]
PRP5_NEUCR2.460e-2838.64Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DED1_NEUCR2.819e-2836.53ATP-dependent RNA helicase ded-1 OS=Neurospora cra... [more]
DED1_BOTFB2.819e-2836.99ATP-dependent RNA helicase ded1 OS=Botryotinia fuc... [more]
DDX46_RAT2.819e-2839.55Probable ATP-dependent RNA helicase DDX46 OS=Rattu... [more]
DDX46_MOUSE2.819e-2839.55Probable ATP-dependent RNA helicase DDX46 OS=Mus m... [more]
DDX46_HUMAN2.819e-2839.55Probable ATP-dependent RNA helicase DDX46 OS=Homo ... [more]
PRP5_ASPTN3.203e-2839.77Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DED1_DEBHA3.231e-2836.98ATP-dependent RNA helicase DED1 OS=Debaryomyces ha... [more]
DED1_ASHGO3.231e-2835.35ATP-dependent RNA helicase DED1 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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