FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_COCIM (ATP-dependent RNA helicase DED1 OS=Coccidioides immitis GN=DED1 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.159e-28 Identity = 81/219 (36.99%), Postives = 123/219 (56.16%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ----RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716 P LI+ P+REL Q Y+ +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE IR + + RQTL+FSAT P IQ AR L V ++VGR G+ + ++ Q+VEYV+ K LL+ L + LIF E + M + + ++ + +R+ RER Sbjct: 263 PTSLILAPTRELVSQIYDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRER 475
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_NEUCR (Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora crassa GN=prp-5 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.460e-28 Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK---KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 +G LI+ P+REL Q Y ++ F ++ LR + GG ++ Q+ +KRG I+VATPGRL D+LA + NL YL LDEADR+ D+GFE + ++F++ + RQT+LFSATMP I + L PV + VG ++ Q VE + + K LLE L Sbjct: 633 DGAIALIMTPTRELCTQIYSDLQPFAKALK------LRVVAAYGGNAIKDQIAELKRGAEIIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTILFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRLLELL 802 HSP 2 Score: 27.335 bits (59), Expect = 2.460e-28 Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAIS 729 +++HGGKDQE+R IS Sbjct: 839 MSIHGGKDQEDRNSTIS 855
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28 Identity = 80/219 (36.53%), Postives = 124/219 (56.62%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716 P LI+ P+REL Q Y+ +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE IR + + RQTL+FSAT P IQ AR L + ++VGR G+ + ++ Q+VEYV+ K LL+ L + LIF E + M + ++ ++ + +R+ RER Sbjct: 280 PTALILAPTRELVSQIYDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPKVNDRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 492
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_BOTFB (ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) GN=ded1 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28 Identity = 81/219 (36.99%), Postives = 124/219 (56.62%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716 P LI+ P+REL Q Y+ +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE IR + + RQTL+FSAT P IQ AR L V ++VGR G+ + ++ Q+VEYV+ K LL+ L + LIF E + M + ++ ++ + +R+ RER Sbjct: 272 PTSLILAPTRELVSQIYDESRKF------AYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 484
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28 Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 GEGP +I+ P+RELA Q + ++F + LR + GG + Q+ +KRG I+V TPGR+ DMLA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++ AR L KP+ V VG DV Q+V +++E K + LLE L Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTL------GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_MOUSE (Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28 Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 GEGP +I+ P+RELA Q + ++F + LR + GG + Q+ +KRG I+V TPGR+ DMLA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++ AR L KP+ V VG DV Q+V +++E K + LLE L Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTL------GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_HUMAN (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28 Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 GEGP +I+ P+RELA Q + ++F + LR + GG + Q+ +KRG I+V TPGR+ DMLA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++ AR L KP+ V VG DV Q+V +++E K + LLE L Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTL------GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPTN (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 3.203e-28 Identity = 70/176 (39.77%), Postives = 101/176 (57.39%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 EGP LI+ P+RELA Q ++ + FL + +LR + GG ++ Q+ +KRG IVV TPGR+ D+LA + N R Y+ LDEADR+ D+GFE + ++ + + RQT+LFSAT P ++ AR L KPV + VG ++ Q VE ++ K V LLE L Sbjct: 621 EGPIGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQTVLFSATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELL 790 HSP 2 Score: 23.483 bits (49), Expect = 3.203e-28 Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAI 726 +++HGGKDQ +R+ I Sbjct: 829 MSIHGGKDQIDRDSTI 844
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_DEBHA (ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii GN=DED1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.231e-28 Identity = 71/192 (36.98%), Postives = 114/192 (59.38%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLM 635 P L++ P+REL Q ++ ++F A +R + GG D+ Q+ ++RG ++VATPGRLKD+L + +++L + +YL LDEADR++D+GFE IR + RQTL+FSAT P +IQ AR L + + ++VGR G+ + ++ Q++ YV+ E K LL+ L + +IF E + M Sbjct: 240 PTALVMAPTRELVSQIFDEAKKF------AYRSWVRPSVVYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSANDNGLTIIFTETKRM 425 HSP 2 Score: 23.8682 bits (50), Expect = 3.231e-28 Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAISS 732 A A+HG + Q ERE A+++ Sbjct: 440 ATAIHGDRSQYEREKALAA 458
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_ASHGO (ATP-dependent RNA helicase DED1 OS=Ashbya gossypii GN=DED1 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.231e-28 Identity = 70/198 (35.35%), Postives = 116/198 (58.59%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTN 653 P +++ P+RELA Q ++ ++F ++ + GG D+R Q+ ++RG ++VATPGRL D+L + K++L + +YL LDEADR++D+GFE IR + + RQTL+FSAT PT IQ+ A L + ++VGR G+ + ++ Q+V +V+ K LL+ L + + L+F E + M T+ Sbjct: 229 PTAVVLAPTRELATQIFDEAKKFTYRSW------VKPCVVYGGADIRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDMPTVENRQTLMFSATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLLDLLAASDGGLTLVFVETKRMADALTD 420 HSP 2 Score: 25.7942 bits (55), Expect = 3.231e-28 Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAIS 729 ++ + A A+HG + Q ERE A++ Sbjct: 424 MQNLSATAIHGDRTQAERERALA 446 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |