FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 3.239e-28 Identity = 74/202 (36.63%), Postives = 103/202 (50.99%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFTN 653 PG+GP L++ P+RELA Q + +F + R +R GG Q+ + RGV I +ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P ++Q R L P+ V VG A I ++ E+ K++ I +L LIF + TN Sbjct: 175 PGDGPIVLVLAPTRELAVQIQQECSKFGSSSR------IRNTCVYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIKHLETATADPEAKCLIFASTKRTCDEITN 370 HSP 2 Score: 23.483 bits (49), Expect = 3.239e-28 Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAI 726 A+A+HG K Q ER++ + Sbjct: 379 ALAIHGDKQQGERDWVL 395
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASHGO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ashbya gossypii GN=PRP5 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28 Identity = 71/179 (39.66%), Postives = 106/179 (59.22%), Query Frame = 3 Query: 72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE-YVKQEAKIVYLLECLQKT 596 GP LI+ P+RELA Q +E V +F + G P +R+L C GG +++ Q+ +KRGV IV+ATPGR D+L+ NL N + ++ +DEADRL DLGFE + ++ + +Q +LFSAT P K+++FA L PV + V N ++ Q+VE + +E K L+ L T Sbjct: 311 GPLGLILSPTRELALQIHEEVTKFTS-----GDPSIRSLCCTGGSELKRQINDIKRGVEIVIATPGRFIDLLSLNSGNLINPKRIVFVVMDEADRLFDLGFEPQVNQIMKCIRPDKQCVLFSATFPNKLKSFASKILHDPVYITVNSKSLINENIEQKVEIFSNEEDKFKSLIHWLALT 484
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_GIBZE (ATP-dependent RNA helicase DED1 OS=Gibberella zeae GN=DED1 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28 Identity = 79/219 (36.07%), Postives = 124/219 (56.62%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716 P LI+ P+REL Q ++ +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE IR + + RQTL+FSAT P IQ AR L + ++VGR G+ + ++ Q+VEYV+ K LL+ L + LIF E + M + ++ ++ + +R+ RER Sbjct: 272 PTSLILAPTRELVSQIFDESRKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPQVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHSHANGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 484
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.176e-28 Identity = 67/179 (37.43%), Postives = 98/179 (54.75%), Query Frame = 3 Query: 60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 VPG+GP LI+ P+REL Q + +++F + + + GG + Q+ +KRG IVV TPGR+ D+L + N R +L +DEADR+ D+GFE I + + + RQT+LFSAT P +++ AR L KPV + VG N D+ Q VE + + LLE L Sbjct: 493 VPGDGPIGLIMAPTRELVVQIHSDIKKFSKAL------GINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELL 665 HSP 2 Score: 24.2534 bits (51), Expect = 4.176e-28 Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAIS 729 +++HGGKDQ +RE ++ Sbjct: 699 LSLHGGKDQTDRESTLA 715
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 4.193e-28 Identity = 72/190 (37.89%), Postives = 101/190 (53.16%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKT--PPPVLIFCENR 629 +GP L++ P+RELA Q E +F G + GG +Q+ +K+GV IV+ATPGRL D+L K NL YL LDEADR++D+GFE IR++ + RQTL+FSAT P ++Q A L + V++G AN +V Q VE + K +L L V++F E R Sbjct: 456 DGPIVLVLAPTRELALQIQEETNKF------GGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETR 639 HSP 2 Score: 25.7942 bits (55), Expect = 4.193e-28 Identity = 8/27 (29.63%), Postives = 16/27 (59.26%), Query Frame = 1 Query: 649 RISTLERIEAVAVHGGKDQEEREYAIS 729 R+ +++ +HG K Q ER++ +S Sbjct: 647 RVLQFSGFKSIGIHGNKSQPERDFVLS 673
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX5_PANTR (Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 4.208e-28 Identity = 68/193 (35.23%), Postives = 112/193 (58.03%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLL-ECLQKTPPPVLIFCENR 629 G+GP CL++ P+RELA+Q +V ++ R L++ GG Q+ ++RGV +ATPGRL D L K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P +++ A L + +N+G +AN +++Q V+ V+++ K++ L+ E + + ++F E + Sbjct: 165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETK 351 HSP 2 Score: 23.8682 bits (50), Expect = 4.208e-28 Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+ +HG K Q+ER++ ++ Sbjct: 368 AMGIHGDKSQQERDWVLN 385
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 4.215e-28 Identity = 78/190 (41.05%), Postives = 103/190 (54.21%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYL----LECLQKTPPPVLIF 617 PG+GP L++ P+RELA Q + +F R +R GGV Q+ + RGV I +ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQT++FSAT P ++Q AR L + V VG AA+ ++ Q VE V K L E L+ VLIF Sbjct: 192 PGDGPIVLVLAPTRELAVQIQQECTKFGKSSR------IRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIF 375 HSP 2 Score: 24.6386 bits (52), Expect = 4.215e-28 Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A+A+HG K Q+ER++ ++ Sbjct: 396 ALAIHGDKAQDERDWVLN 413
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPNC (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp5 PE=3 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 5.427e-28 Identity = 68/176 (38.64%), Postives = 100/176 (56.82%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 EGP LI+ P+RELA Q ++ + FL + +LR + GG ++ Q+ +KRG I+V TPGR+ D+LA + N R Y+ LDEADR+ D+GFE + ++ + + RQT+LFSAT P ++ AR L KP+ + VG ++ Q VE + K V LLE L Sbjct: 619 EGPVGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIADLKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLELL 788 HSP 2 Score: 23.483 bits (49), Expect = 5.427e-28 Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAI 726 +++HGGKDQ +R+ I Sbjct: 827 MSIHGGKDQIDRDSTI 842
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.478e-28 Identity = 69/203 (33.99%), Postives = 116/203 (57.14%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL------QKTPPPVLIFCENRLMLTTFTN 653 PF +I+ P+RELA Q ++ ++F + ++ ++ GG + QL ++RG I+VATPGRL D+L + ++++ R+L LDEADR++D+GFE IR++ + + RQT+LFSAT P++IQ A + + + VGR G++ + Q VE+V++ K +L++ L Q L+F E + T N Sbjct: 230 PFAVILSPTRELACQIHDEAKKF------SYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLEN 426 HSP 2 Score: 25.0238 bits (53), Expect = 5.478e-28 Identity = 9/24 (37.50%), Postives = 15/24 (62.50%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAISS 732 + A ++HG + Q+ERE A+ S Sbjct: 430 MNEFPATSIHGDRTQQEREVALRS 453
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 5.485e-28 Identity = 69/193 (35.75%), Postives = 101/193 (52.33%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 G+GP L++ P+RELA Q +F R +R GG Q+ + RGV I +ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P ++Q R L P+ V +G A I ++ E+ K++ + +L L + +L+F + Sbjct: 198 GDGPIVLVLAPTRELAVQIQTECSKFGKSSR------IRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFASTK 384 HSP 2 Score: 25.0238 bits (53), Expect = 5.485e-28 Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAI 726 A+A+HG K+Q ER++ + Sbjct: 401 ALAIHGDKEQNERDWVL 417 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |