FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.239e-28
Identity = 74/202 (36.63%), Postives = 103/202 (50.99%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENRLMLTTFTN 653
            PG+GP  L++ P+RELA Q  +   +F +  R      +R     GG     Q+  + RGV I +ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P ++Q   R  L  P+ V VG    A    I ++     E+ K++  I +L           LIF   +      TN
Sbjct:  175 PGDGPIVLVLAPTRELAVQIQQECSKFGSSSR------IRNTCVYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIKHLETATADPEAKCLIFASTKRTCDEITN 370          

HSP 2 Score: 23.483 bits (49), Expect = 3.239e-28
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+A+HG K Q ER++ +
Sbjct:  379 ALAIHGDKQQGERDWVL 395          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASHGO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ashbya gossypii GN=PRP5 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 71/179 (39.66%), Postives = 106/179 (59.22%), Query Frame = 3
Query:   72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE-YVKQEAKIVYLLECLQKT 596
            GP  LI+ P+RELA Q +E V +F +     G P +R+L C GG +++ Q+  +KRGV IV+ATPGR  D+L+    NL N +   ++ +DEADRL DLGFE  + ++    +  +Q +LFSAT P K+++FA   L  PV + V      N ++ Q+VE +  +E K   L+  L  T
Sbjct:  311 GPLGLILSPTRELALQIHEEVTKFTS-----GDPSIRSLCCTGGSELKRQINDIKRGVEIVIATPGRFIDLLSLNSGNLINPKRIVFVVMDEADRLFDLGFEPQVNQIMKCIRPDKQCVLFSATFPNKLKSFASKILHDPVYITVNSKSLINENIEQKVEIFSNEEDKFKSLIHWLALT 484          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_GIBZE (ATP-dependent RNA helicase DED1 OS=Gibberella zeae GN=DED1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 79/219 (36.07%), Postives = 124/219 (56.62%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ  AR  L   + ++VGR G+ + ++ Q+VEYV+   K   LL+ L      + LIF E + M  + ++    ++  +     +R+ RER
Sbjct:  272 PTSLILAPTRELVSQIFDESRKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPQVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHSHANGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 484          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.176e-28
Identity = 67/179 (37.43%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            VPG+GP  LI+ P+REL  Q +  +++F   +       +  +   GG  +  Q+  +KRG  IVV TPGR+ D+L      + N R   +L +DEADR+ D+GFE  I  +  + +  RQT+LFSAT P +++  AR  L KPV + VG     N D+ Q VE   +  +   LLE L
Sbjct:  493 VPGDGPIGLIMAPTRELVVQIHSDIKKFSKAL------GINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELL 665          

HSP 2 Score: 24.2534 bits (51), Expect = 4.176e-28
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAIS 729
            +++HGGKDQ +RE  ++
Sbjct:  699 LSLHGGKDQTDRESTLA 715          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.193e-28
Identity = 72/190 (37.89%), Postives = 101/190 (53.16%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKT--PPPVLIFCENR 629
            +GP  L++ P+RELA Q  E   +F       G   +      GG    +Q+  +K+GV IV+ATPGRL D+L   K NL    YL LDEADR++D+GFE  IR++    +  RQTL+FSAT P ++Q  A   L   + V++G     AN +V Q VE  +   K   +L  L        V++F E R
Sbjct:  456 DGPIVLVLAPTRELALQIQEETNKF------GGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETR 639          

HSP 2 Score: 25.7942 bits (55), Expect = 4.193e-28
Identity = 8/27 (29.63%), Postives = 16/27 (59.26%), Query Frame = 1
Query:  649 RISTLERIEAVAVHGGKDQEEREYAIS 729
            R+      +++ +HG K Q ER++ +S
Sbjct:  647 RVLQFSGFKSIGIHGNKSQPERDFVLS 673          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX5_PANTR (Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.208e-28
Identity = 68/193 (35.23%), Postives = 112/193 (58.03%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEY---VKQEAKIVYLL-ECLQKTPPPVLIFCENR 629
            G+GP CL++ P+RELA+Q  +V  ++    R      L++    GG     Q+  ++RGV   +ATPGRL D L   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P +++  A   L   + +N+G    +AN +++Q V+    V+++ K++ L+ E + +     ++F E +
Sbjct:  165 GDGPICLVLAPTRELAQQVQQVAAEYCRACR------LKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETK 351          

HSP 2 Score: 23.8682 bits (50), Expect = 4.208e-28
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+ +HG K Q+ER++ ++
Sbjct:  368 AMGIHGDKSQQERDWVLN 385          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.215e-28
Identity = 78/190 (41.05%), Postives = 103/190 (54.21%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYL----LECLQKTPPPVLIF 617
            PG+GP  L++ P+RELA Q  +   +F    R      +R     GGV    Q+  + RGV I +ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQT++FSAT P ++Q  AR  L   + V VG    AA+ ++ Q VE V    K   L     E L+     VLIF
Sbjct:  192 PGDGPIVLVLAPTRELAVQIQQECTKFGKSSR------IRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIF 375          

HSP 2 Score: 24.6386 bits (52), Expect = 4.215e-28
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A+A+HG K Q+ER++ ++
Sbjct:  396 ALAIHGDKAQDERDWVLN 413          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_ASPNC (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp5 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 5.427e-28
Identity = 68/176 (38.64%), Postives = 100/176 (56.82%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            EGP  LI+ P+RELA Q ++  + FL  +      +LR +   GG  ++ Q+  +KRG  I+V TPGR+ D+LA     + N R   Y+ LDEADR+ D+GFE  + ++  + +  RQT+LFSAT P  ++  AR  L KP+ + VG       ++ Q VE    + K V LLE L
Sbjct:  619 EGPVGLIMTPTRELATQIHKDCKPFLKAL------NLRAVCAYGGAPIKDQIADLKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLELL 788          

HSP 2 Score: 23.483 bits (49), Expect = 5.427e-28
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAI 726
            +++HGGKDQ +R+  I
Sbjct:  827 MSIHGGKDQIDRDSTI 842          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.478e-28
Identity = 69/203 (33.99%), Postives = 116/203 (57.14%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL------QKTPPPVLIFCENRLMLTTFTN 653
            PF +I+ P+RELA Q ++  ++F      +    ++ ++  GG  +  QL  ++RG  I+VATPGRL D+L + ++++   R+L LDEADR++D+GFE  IR++ +      +  RQT+LFSAT P++IQ  A   +   + + VGR G++   + Q VE+V++  K  +L++ L      Q      L+F E +    T  N
Sbjct:  230 PFAVILSPTRELACQIHDEAKKF------SYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLEN 426          

HSP 2 Score: 25.0238 bits (53), Expect = 5.478e-28
Identity = 9/24 (37.50%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  661 LERIEAVAVHGGKDQEEREYAISS 732
            +    A ++HG + Q+ERE A+ S
Sbjct:  430 MNEFPATSIHGDRTQQEREVALRS 453          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.485e-28
Identity = 69/193 (35.75%), Postives = 101/193 (52.33%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV-----EYVKQEAKIVYLLECLQKTPPPVLIFCENR 629
            G+GP  L++ P+RELA Q      +F    R      +R     GG     Q+  + RGV I +ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P ++Q   R  L  P+ V +G    A    I ++     E+ K++  + +L   L +    +L+F   +
Sbjct:  198 GDGPIVLVLAPTRELAVQIQTECSKFGKSSR------IRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFASTK 384          

HSP 2 Score: 25.0238 bits (53), Expect = 5.485e-28
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+A+HG K+Q ER++ +
Sbjct:  401 ALAIHGDKEQNERDWVL 417          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_DEBHA3.239e-2836.63ATP-dependent RNA helicase DBP2 OS=Debaryomyces ha... [more]
PRP5_ASHGO3.682e-2839.66Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DED1_GIBZE3.682e-2836.07ATP-dependent RNA helicase DED1 OS=Gibberella zeae... [more]
RH42_ORYSJ4.176e-2837.43DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sa... [more]
DDX17_DICDI4.193e-2837.89Probable ATP-dependent RNA helicase ddx17 OS=Dicty... [more]
DDX5_PANTR4.208e-2835.23Probable ATP-dependent RNA helicase DDX5 OS=Pan tr... [more]
DBP2_SCHPO4.215e-2841.05ATP-dependent RNA helicase dbp2 OS=Schizosaccharom... [more]
PRP5_ASPNC5.427e-2838.64Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
RH11_ARATH5.478e-2833.99DEAD-box ATP-dependent RNA helicase 11 OS=Arabidop... [more]
DBP2_CANAL5.485e-2835.75ATP-dependent RNA helicase DBP2 OS=Candida albican... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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