FC920902

Overview
NameFC920902
Unique NameFC920902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:20..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: XYLD_RHIME (Putative D-xylulose reductase OS=Rhizobium meliloti GN=R02526 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.089e-40
Identity = 81/159 (50.94%), Postives = 107/159 (67.30%), Query Frame = 1
Query:  145 LGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 621
            L P DVL+ ++ VGVCGSDVH+    ++  FVV EPM++GHE AGV+ +VGS+V+ L  GDRV +EPGI        K G YN+ P  +   +PPVHGCL  +VVHPA   ++LPD+VS  EGAM EP ++GV A  RA I P     +MG+GPIG++T
Sbjct:   24 LSPTDVLIGIRTVGVCGSDVHYYTHGKIGPFVVNEPMILGHEAAGVVLEVGSQVRHLKKGDRVCMEPGIPDLSSRSSKLGIYNVDPSVRFWATPPVHGCLTPEVVHPAAFTYRLPDHVSFAEGAMVEPFAIGVQAALRAGIRPGDVGAVMGAGPIGMMT 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: DHSO_BOMMO (Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.654e-40
Identity = 79/179 (44.13%), Postives = 114/179 (63.69%), Query Frame = 1
Query:   82 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            N AA L G N ++I+ + +P +   +VL+++  VG+CGSDV    T      V+ +P+VIGHE AG + KVG +V +L  GDRVA+EP   C  C+ CK G+YNLC E +   S    G L     H AD C KLPDN+++EEGA  +PL++ +HAC RA I   + ++I+G+GPIG++
Sbjct:    4 NYAAVLHGANDVRIEKIPVPEINDDEVLIKIDCVGICGSDVKLYSTGTCGADVIDKPIVIGHEGAGTVVKVGDKVSSLRVGDRVAIEPTQPCRSCELCKRGKYNLCVEPRYCSSMGAPGNLCRYYKHVADFCHKLPDNLTMEEGAAVQPLAIVIHACNRAKITLGSKIVILGAGPIGIL 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: XYLD_MORMO (D-xylulose reductase OS=Morganella morganii PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.146e-38
Identity = 82/175 (46.86%), Postives = 109/175 (62.29%), Query Frame = 1
Query:  145 LGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTC*ELVLXSS*NVIVDV 669
            LG  DV +++  VG+CGSDVH+ +  R+  FVV EPMV+GHE +GVI   G  VK L  GDRV +EPGI   Q    + G YNL P  +   +PP+ GCL   V+HPA   FKLPDNVS  +GAM EPL++G+ +  +A I P    L++G+G IG++T   L    S  +I DV
Sbjct:   25 LGDDDVEIKIHTVGICGSDVHYYQHGRIGPFVVDEPMVLGHEASGVITAAGKNVKHLKVGDRVCMEPGIPDLQSPQSRAGIYNLDPAVRFWATPPIDGCLRESVIHPAAFTFKLPDNVSFAQGAMVEPLAIGMQSATKAGIKPGDIGLVIGAGTIGIITQSALAGGCSDVIICDV 199          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: XYLD_AGRT5 (Putative D-xylulose reductase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=Atu4318 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.823e-37
Identity = 75/158 (47.47%), Postives = 101/158 (63.92%), Query Frame = 1
Query:  145 LGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            LGP DV +R   VG+CGSDVH+    ++  FVV  PMV+GHE +G + + GS+V  L  GDRV +EPGI        K G YN+ P  +   +PP+HGCL  +V+HPA   +KLPDNVS  EGAM EP ++G+ A  RA I P    ++ G+GPIG++
Sbjct:   28 LGPKDVRIRTHTVGICGSDVHYYTHGKIGHFVVNAPMVLGHEASGTVIETGSDVTHLKIGDRVCMEPGIPDPTSRASKLGIYNVDPAVRFWATPPIHGCLTPEVIHPAAFTYKLPDNVSFAEGAMVEPFAIGMQAALRARIQPGDIAVVTGAGPIGMM 185          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: DHSO1_YEAST (Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SOR1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37
Identity = 76/181 (41.99%), Postives = 112/181 (61.88%), Query Frame = 1
Query:   82 NMAAWLMGVNTLKIQPLELPSL-GPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 621
            N A  L  V  + I+   +P++  P+ V + +KA G+CGSD+H+ ++  +  +++K PMV+GHE +G + +VG  V  +  GDRVA+EPG+     D  K GRYNLCP      +PP+ G L    + P D   KLP+ VS EEGA  EPLSVGVH+ + A +   T V++ G+GP+GL+T
Sbjct:    6 NPAVVLEKVGDIAIEQRPIPTIKDPHYVKLAIKATGICGSDIHYYRSGGIGKYILKAPMVLGHESSGQVVEVGDAVTRVKVGDRVAIEPGVPSRYSDETKEGRYNLCPHMAFAATPPIDGTLVKYYLSPEDFLVKLPEGVSYEEGACVEPLSVGVHSNKLAGVRFGTKVVVFGAGPVGLLT 186          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: XYLD_RHILO (Putative D-xylulose reductase OS=Rhizobium loti GN=mlr4915 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.401e-36
Identity = 76/169 (44.97%), Postives = 105/169 (62.13%), Query Frame = 1
Query:  115 LKIQPLELP-SLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ + LP  +GP DV + +  VGVCGSDVH+     +  +VV+ PMV+GHE AG + + G+ V+T   GDRV +EPG+        K G YN+ P+     +PPVHG LA   VHPA   +KLPDNVS  EGAM EP ++G+ A  RA I P    +++G GPIG++
Sbjct:   12 LSLREIALPLDVGPDDVKIAIHTVGVCGSDVHYYTHGAIGSYVVRAPMVLGHEAAGTVVETGANVETFKAGDRVCMEPGVPNLSSRATKLGIYNVDPDVSFWATPPVHGVLAPYAVHPAAFTYKLPDNVSFAEGAMVEPFAIGMQAASRARIVPGDVAVVVGCGPIGIM 180          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: DHSO2_YEAST (Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=SOR2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.122e-36
Identity = 75/181 (41.44%), Postives = 111/181 (61.33%), Query Frame = 1
Query:   82 NMAAWLMGVNTLKIQPLELPSL-GPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 621
            N A  L  V  + I+   +P++  P+ V + +KA G+CGSD+H+ ++  +  +++K PMV+GHE +G + +VG  V  +  GDRVA+EPG+     D  K G YNLCP      +PP+ G L    + P D   KLP+ VS EEGA  EPLSVGVH+ + A +   T V++ G+GP+GL+T
Sbjct:    6 NPAVVLEKVGDIAIEQRPIPTIKDPHYVKLAIKATGICGSDIHYYRSGGIGKYILKAPMVLGHESSGQVVEVGDAVTRVKVGDRVAIEPGVPSRYSDETKEGSYNLCPHMAFAATPPIDGTLVKYYLSPEDFLVKLPEGVSYEEGACVEPLSVGVHSNKLAGVRFGTKVVVFGAGPVGLLT 186          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: XYL2_YEAST (D-xylulose reductase OS=Saccharomyces cerevisiae GN=XYL2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.186e-35
Identity = 74/156 (47.44%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  151 PYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            P +V++++KA G+CGSD+H+    R+A++VV+ PMV+GHE +G++  +G  VKTL  GDRVALEPGI        K GRYNL P  K   +PP  G L        D  +KLPD+VS EEGA+ EPLSV +HA + A I      ++ G+GPIGL+
Sbjct:   31 PNEVIIQIKATGICGSDIHYYTHGRIANYVVESPMVLGHESSGIVALIGENVKTLKVGDRVALEPGIPDRFSPEMKEGRYNLDPNLKFAATPPFDGTLTKYYKTMKDFVYKLPDDVSFEEGALIEPLSVAIHANKLAKIKFGARCVVFGAGPIGLL 186          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: YDJJ_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjJ OS=Escherichia coli (strain K12) GN=ydjJ PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.451e-35
Identity = 76/185 (41.08%), Postives = 113/185 (61.08%), Query Frame = 1
Query:   82 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVV-KEP---MVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPP-VHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 621
            N  A L    T+KI   E+P     +VL++++ VG+CGSDVH  ++     F+  K+P   + +GHECAG +  VGS V+   PGDRV +EPG+ C  C YC  G+YN+CP+   + + P   G L + + HP    +KLPDN+   EGA+ EP +VG+HA   A++ P   ++I+G+G IGL+T
Sbjct:    3 NSKAILQVPGTMKIISAEIPVPKEDEVLIKVEYVGICGSDVHGFES---GPFIPPKDPNQEIGLGHECAGTVVAVGSRVRKFKPGDRVNIEPGVPCGHCRYCLEGKYNICPDVDFMATQPNYRGALTHYLCHPESFTYKLPDNMDTMEGALVEPAAVGMHAAMLADVKPGKKIIILGAGCIGLMT 184          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: XYL2_PICST (D-xylulose reductase OS=Pichia stipitis GN=XYL2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.984e-34
Identity = 78/187 (41.71%), Postives = 108/187 (57.75%), Query Frame = 1
Query:   82 NMAAWLMGVNTLKIQPLELPSLG-PYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE-------SKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            N +  L  ++ +  +  + P +  P DVLV++K  G+CGSD+HF    R+ +FV+ +PMV+GHE AG + +VG  V +L  GD VA+EPGI     D  K G YNLCP        +   G P   G L      P D   KLPD+VSLE GA+ EPLSVGVHA +  ++     V + G+GP+GL+
Sbjct:    4 NPSLVLNKIDDISFETYDAPEISEPTDVLVQVKKTGICGSDIHFYAHGRIGNFVLTKPMVLGHESAGTVVQVGKGVTSLKVGDNVAIEPGIPSRFSDEYKSGHYNLCPHMAFAATPNSKEGEPNPPGTLCKYFKSPEDFLVKLPDHVSLELGALVEPLSVGVHASKLGSVAFGDYVAVFGAGPVGLL 190          
The following BLAST results are available for this feature:
BLAST of FC920902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
XYLD_RHIME2.089e-4050.94Putative D-xylulose reductase OS=Rhizobium melilot... [more]
DHSO_BOMMO4.654e-4044.13Sorbitol dehydrogenase OS=Bombyx mori GN=SDH PE=2 ... [more]
XYLD_MORMO1.146e-3846.86D-xylulose reductase OS=Morganella morganii PE=1 S... [more]
XYLD_AGRT52.823e-3747.47Putative D-xylulose reductase OS=Agrobacterium tum... [more]
DHSO1_YEAST6.290e-3741.99Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisi... [more]
XYLD_RHILO1.401e-3644.97Putative D-xylulose reductase OS=Rhizobium loti GN... [more]
DHSO2_YEAST3.122e-3641.44Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisi... [more]
XYL2_YEAST1.186e-3547.44D-xylulose reductase OS=Saccharomyces cerevisiae G... [more]
YDJJ_ECOLI3.451e-3541.08Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
XYL2_PICST4.984e-3441.71D-xylulose reductase OS=Pichia stipitis GN=XYL2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC32014E11EF RVDevelop1 Citrus clementina cDNA clone C32014E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920902 ID=FC920902; Name=FC920902; organism=Citrus clementina; type=EST; length=669bp
ACTTGTGTTTTTTCAGAGTGAAAAGCAAATATGGGCAAGGGAGGGATGTC
ACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTA
TGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGA
CCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGA
TGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGC
CTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGC
GAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGAT
CAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTC
CAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAAT
CAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAG
CCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCT
GCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCA
GGGCCCATAGGACTTGTCACATGCTAGGAGCTCGTGCTTTTNAGCTCCTA
GAATGTCATTGTGGATGTG
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