FC920902

Overview
NameFC920902
Unique NameFC920902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_FRATO (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tdh PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+
Sbjct:   16 INDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLM 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_FRATN (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. novicida (strain U112) GN=tdh PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+
Sbjct:   16 IDDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLM 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_FRATM (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tdh PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+
Sbjct:   16 INDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLM 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_FRATH (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tdh PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+
Sbjct:   16 INDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLM 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_FRATF (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tdh PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+
Sbjct:   16 INDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLM 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_FRAT1 (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tdh PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.818e-23
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+
Sbjct:   16 INDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLM 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_XANOR (L-threonine 3-dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=tdh PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 59/181 (32.60%), Postives = 94/181 (51.93%), Query Frame = 1
Query:   76 EVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            E N   WL        + + +P+ GP +VL++++   +CG+D+H       +   +K  + IGHE  G + ++GS V     G RV+ E  I C  C  C+GGR +LCP + G+G   V+G  A  +V PA   + +PD +  E  A  +P     H     ++  E +VLI G+GPIG++
Sbjct:    8 ETNKGIWL--------EQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTMGIG-VNVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGE-DVLITGAGPIGII 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_XANOM (L-threonine 3-dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=tdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 59/181 (32.60%), Postives = 94/181 (51.93%), Query Frame = 1
Query:   76 EVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            E N   WL        + + +P+ GP +VL++++   +CG+D+H       +   +K  + IGHE  G + ++GS V     G RV+ E  I C  C  C+GGR +LCP + G+G   V+G  A  +V PA   + +PD +  E  A  +P     H     ++  E +VLI G+GPIG++
Sbjct:    8 ETNKGIWL--------EQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTMGIG-VNVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGE-DVLITGAGPIGII 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_SHEWM (L-threonine 3-dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 56/160 (35.00%), Postives = 90/160 (56.25%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVDIGQEVRGFSIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-DGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_SHESR (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain MR-7) GN=tdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 56/160 (35.00%), Postives = 90/160 (56.25%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIM 178          
The following BLAST results are available for this feature:
BLAST of FC920902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TDH_FRATO8.818e-2334.94L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATN8.818e-2334.94L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATM8.818e-2334.94L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATH8.818e-2334.94L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATF8.818e-2334.94L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRAT18.818e-2334.94L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_XANOR1.152e-2232.60L-threonine 3-dehydrogenase OS=Xanthomonas oryzae ... [more]
TDH_XANOM1.152e-2232.60L-threonine 3-dehydrogenase OS=Xanthomonas oryzae ... [more]
TDH_SHEWM1.152e-2235.00L-threonine 3-dehydrogenase OS=Shewanella woodyi (... [more]
TDH_SHESR1.152e-2235.00L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014E11EF RVDevelop1 Citrus clementina cDNA clone C32014E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920902 ID=FC920902; Name=FC920902; organism=Citrus clementina; type=EST; length=669bp
ACTTGTGTTTTTTCAGAGTGAAAAGCAAATATGGGCAAGGGAGGGATGTC
ACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTA
TGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGA
CCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGA
TGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGC
CTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGC
GAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGAT
CAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTC
CAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAAT
CAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAG
CCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCT
GCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCA
GGGCCCATAGGACTTGTCACATGCTAGGAGCTCGTGCTTTTNAGCTCCTA
GAATGTCATTGTGGATGTG
back to top