FC920902

Overview
NameFC920902
Unique NameFC920902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_SHESW (L-threonine 3-dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=tdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 56/160 (35.00%), Postives = 90/160 (56.25%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            P +G  D+L+++K   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++
Sbjct:   21 PVMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFNIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_PARUW (L-threonine 3-dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=tdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 66/169 (39.05%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  115 LKIQPLELPS-LGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ L +PS +   +VL++     +CG+DVH  K    A   V  P+VIGHE  G I + G  VK    G+RV  E  I C QC  C+ GR ++C  +KGLG   + GC A   V PA+  F LP ++S + GA+ +P    VH     N+  E +VLI G+GPIG++
Sbjct:   13 LWMENLPIPSHVKDDEVLIKTIKTSICGTDVHIYKWDAWAQKNVPVPLVIGHEFIGEIAEFGKNVKGFKIGERVCGEGHIVCNQCPNCRMGRKHVCMHTKGLGY-HISGCFAEYFVLPAENVFSLPPSISDDLGAIFDPYGNAVHTTLAFNLIGE-DVLITGAGPIGIM 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_MARMS (L-threonine 3-dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=tdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIG 612
            P  G  DV++++    +CG+D+H  +    A   +  PM +GHE  GVI +VG EV     GDRV+ E  I+C  C  C+ GR +LC ++ G+G     G  A  +V PA   FK+P+N+S +  A+ +P     H     ++  E +VLI G+GPIG
Sbjct:   21 PDCGHNDVVIKISKTAICGTDMHIYQWDDWAQNTIPVPMTVGHEFVGVITEVGPEVSGFKIGDRVSGEGHITCGHCRNCRAGRRHLCRKTLGVGVNRT-GAFAEYLVIPASNAFKIPNNISDDMAAIFDPFGNATHTALSFDLIGE-DVLITGAGPIG 176          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_THET8 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tdh PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  136 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +P  GP ++LVR++A  +CG+D+H  K    A   ++ P+V GHE +GV+E VG  V+    GD V+LE  I C  C  C+ G Y++C  ++ LG     G  A  VV PA+  +  P ++  E  A+ EP    VH     +     +VLI G+GPIGL+
Sbjct:   20 VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDR-DGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLM 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: Y053_HAEIN (Uncharacterized zinc-type alcohol dehydrogenase-like protein HI0053 OS=Haemophilus influenzae GN=HI0053 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.376e-22
Identity = 58/188 (30.85%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  109 NTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVP-GDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTC*ELVLXSS*NVIVDV 669
            N + ++ +  P     DVL++++++G+CGSD+      R  + +V  P ++GHE  G + + G  +   V  GDRV ++P + C QC  C  GR N C   K +G   + G +   + HPA L  K+PDN+ + +  + EPL++ +HA  R  +    +++I+G+G IGL+     V   +  ++VD+
Sbjct:   14 NNVVVKEVPYPEKSDNDVLIQVESMGICGSDIG---AYRGTNPLVTYPRILGHEIVGRVIESGIGMSDGVRVGDRVIVDPYVCCGQCYPCSIGRTNCCESLKVIGVH-IDGGMQEVIRHPAHLLTKVPDNLPIHQLPLAEPLTIALHALHRTTLKSGEHIVIIGAGAIGLMAALAAVQYGAIPILVDI 197          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_XANC5 (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=tdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.376e-22
Identity = 58/181 (32.04%), Postives = 94/181 (51.93%), Query Frame = 1
Query:   76 EVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            E N   WL        + + +P+ GP +VL++++   +CG+D+H       +   ++  + IGHE  G + ++GS V     G RV+ E  I C  C  C+GGR +LCP + G+G   V+G  A  +V PA   + +PD +  E  A  +P     H     ++  E +VLI G+GPIG++
Sbjct:    8 EANKGIWL--------EQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIRPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTVGIG-VNVNGAFAEYMVMPASNLWLIPDQIPSELAAFFDPYGNAAHCALEFDVIGE-DVLITGAGPIGII 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BURXL (L-threonine 3-dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=tdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.376e-22
Identity = 59/168 (35.12%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L +  ++ P +G  DV++R+    +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+P  +S +  A+ +P     H     N+  E +VLI G+GPIG++
Sbjct:   13 LTLTDVKKPEVGHNDVMIRITRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLVIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BURPP (L-threonine 3-dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=tdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.376e-22
Identity = 59/168 (35.12%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L +  ++ P +G  DV++R+    +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+P  +S +  A+ +P     H     N+  E +VLI G+GPIG++
Sbjct:   13 LTLTDVKKPEVGHNDVMIRITRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLVIPAFNAFKIPPEISDDLAAIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_XANAC (L-threonine 3-dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=tdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.715e-22
Identity = 58/181 (32.04%), Postives = 94/181 (51.93%), Query Frame = 1
Query:   76 EVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            E N   WL        + + +P+ GP +VL++++   +CG+D+H       +   ++  + IGHE  G + ++GS V     G RV+ E  I C  C  C+GGR +LCP + G+G   V+G  A  +V PA   + +PD +  E  A  +P     H     ++  E +VLI G+GPIG++
Sbjct:    8 EANKGIWL--------EQVPVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIEPGLTIGHEFVGRVAELGSAVTGYQIGQRVSAEGHIVCGHCRNCRGGRPHLCPNTVGIG-VNVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGE-DVLITGAGPIGII 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_RHIE6 (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=tdh PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 60/169 (35.50%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ + +P +GP DVL+R+K   +CG+DVH     + A   +  PMV+GHE +G I ++GS V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G     V  P      +PD++S E  A+ +P    VH     ++  E +VL+ G+GPIG++
Sbjct:   17 LWMEDVPVPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIM 182          
The following BLAST results are available for this feature:
BLAST of FC920902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TDH_SHESW2.566e-2235.00L-threonine 3-dehydrogenase OS=Shewanella sp. (str... [more]
TDH_PARUW2.566e-2239.05L-threonine 3-dehydrogenase OS=Protochlamydia amoe... [more]
TDH_MARMS2.566e-2236.71L-threonine 3-dehydrogenase OS=Marinomonas sp. (st... [more]
TDH_THET83.351e-2237.27L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
Y053_HAEIN4.376e-2230.85Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_XANC54.376e-2232.04L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_BURXL4.376e-2235.12L-threonine 3-dehydrogenase OS=Burkholderia xenovo... [more]
TDH_BURPP4.376e-2235.12L-threonine 3-dehydrogenase OS=Burkholderia phytof... [more]
TDH_XANAC5.715e-2232.04L-threonine 3-dehydrogenase OS=Xanthomonas axonopo... [more]
TDH_RHIE67.465e-2235.50L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]

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Properties
Property NameValue
Genbank descriptionC32014E11EF RVDevelop1 Citrus clementina cDNA clone C32014E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920902 ID=FC920902; Name=FC920902; organism=Citrus clementina; type=EST; length=669bp
ACTTGTGTTTTTTCAGAGTGAAAAGCAAATATGGGCAAGGGAGGGATGTC
ACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTA
TGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGA
CCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGA
TGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGC
CTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGC
GAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGAT
CAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTC
CAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAAT
CAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAG
CCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCT
GCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCA
GGGCCCATAGGACTTGTCACATGCTAGGAGCTCGTGCTTTTNAGCTCCTA
GAATGTCATTGTGGATGTG
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