FC920902

Overview
NameFC920902
Unique NameFC920902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BURCJ (L-threonine 3-dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=tdh PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L +  ++ P +G  DVL++++   +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI G+GPIG++
Sbjct:   13 LTLTRVKRPEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BURCH (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=tdh PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L +  ++ P +G  DVL++++   +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI G+GPIG++
Sbjct:   13 LTLTRVKRPEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BURCC (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L +  ++ P +G  DVL++++   +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI G+GPIG++
Sbjct:   13 LTLTRVKRPEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BURCA (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=tdh PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L +  ++ P +G  DVL++++   +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI G+GPIG++
Sbjct:   13 LTLTRVKRPEVGHNDVLIKIRRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: YJMD_BACSU (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjmD OS=Bacillus subtilis GN=yjmD PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 61/156 (39.10%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  157 DVLVRMKAVGVCGSDVHFLK-TLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGL 615
            +VLV++K VG+CGSD+H    T  LA      P VIGHE  G +E VG+ V++L PGD V +EP   C  C  C+ GR N+C +    G   VH  G +   +V P      +  ++  EE  M EP ++G  A  R  +     VLI G+GPIG+
Sbjct:   27 EVLVKVKRVGICGSDMHIYHGTNPLATL----PRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGRPNVCAKLSVFG---VHEDGGMREYIVLPERQLHAVSKDLPWEEAVMAEPYTIGAQAVWRGQVEKGDTVLIQGAGPIGI 175          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_SOLUE (L-threonine 3-dehydrogenase OS=Solibacter usitatus (strain Ellin6076) GN=tdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 60/169 (35.50%), Postives = 91/169 (53.85%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ +  P++G  DVL+R+   G+CG+DVH  K    A   +  PM IGHE  G IE VGS V    PGD V+ E  + C +C  C  GR +LC ++ G+G + P  G  A  +  P    ++  + + L+  A+ +P    VH      +  E +VLI G+GPIG++
Sbjct:   13 LWLEEIPEPAIGINDVLIRVLRTGICGTDVHIYKWDEWARETIHVPMAIGHEFVGRIEAVGSNVADFFPGDIVSGEGHVVCGRCRNCFAGRRHLCAKTMGVGVNRP--GAFAEYIALPMTNIWRHHEGIDLDVAAIFDPFGNAVHTALSFPVLGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_SHEFN (L-threonine 3-dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=tdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            P +G  D+L++++   +CG+DVH       +   +  PM+ GHE  G +  VG EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+P ++  +  A+ +P    VH     ++  E +VLI G+GPIG++
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMIAGHEYVGEVVDVGQEVRGFSIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-DGAFAEYLVLPAFNAFKIPADIPDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_RHISN (L-threonine 3-dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=tdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ + +P +GP DVL+R+K   +CG+DVH     + A   +  PMV+GHE  G I +VGS V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G  A  V  P      +PD+V  E  A+ +P    VH     ++  E +VL+ G+GPIG++
Sbjct:   17 LWMERVPVPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIAEVGSAVTKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFAEFVCLPEYNVVTIPDDVPDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIM 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_PYRFU (Probable L-threonine 3-dehydrogenase OS=Pyrococcus furiosus GN=tdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 56/163 (34.36%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  130 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +++P  GP +VL+++ A  +CG+D+H  +    A   ++ P ++GHE AG + +VG  V+ +  GD V++E  I C +C  CK G+Y++C  +K  G     G  A   V PA   +K P N+  E   + EPL   V       I  + +VLI G+GP+GL+
Sbjct:   22 VDVPKPGPGEVLIKILATSICGTDLHIYEWNEWAQTRIRPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACKRGQYHVCQNTKIFG-VDTDGVFAEYAVVPAQNVWKNPKNIPPEYATLQEPLGNAVDTVLAGPIAGK-SVLITGAGPLGLL 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_RHILW (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=tdh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21
Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ + +P +GP DVL+R++   +CG+DVH     + A   +  PMV+GHE +G I ++GS V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G     V  P      +P+++S E  A+ +P    VH     ++  E +VL+ G+GPIG++
Sbjct:   17 LWMENVPVPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVAIPEDISDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIM 182          
The following BLAST results are available for this feature:
BLAST of FC920902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TDH_BURCJ2.172e-2133.93L-threonine 3-dehydrogenase OS=Burkholderia cepaci... [more]
TDH_BURCH2.172e-2133.93L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_BURCC2.172e-2133.93L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_BURCA2.172e-2133.93L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
YJMD_BACSU2.837e-2139.10Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_SOLUE4.838e-2135.50L-threonine 3-dehydrogenase OS=Solibacter usitatus... [more]
TDH_SHEFN4.838e-2134.38L-threonine 3-dehydrogenase OS=Shewanella frigidim... [more]
TDH_RHISN4.838e-2136.69L-threonine 3-dehydrogenase OS=Rhizobium sp. (stra... [more]
TDH_PYRFU4.838e-2134.36Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_RHILW6.319e-2134.32L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]

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Properties
Property NameValue
Genbank descriptionC32014E11EF RVDevelop1 Citrus clementina cDNA clone C32014E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920902 ID=FC920902; Name=FC920902; organism=Citrus clementina; type=EST; length=669bp
ACTTGTGTTTTTTCAGAGTGAAAAGCAAATATGGGCAAGGGAGGGATGTC
ACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTA
TGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGA
CCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGA
TGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGC
CTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGC
GAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGAT
CAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTC
CAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAAT
CAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAG
CCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCT
GCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCA
GGGCCCATAGGACTTGTCACATGCTAGGAGCTCGTGCTTTTNAGCTCCTA
GAATGTCATTGTGGATGTG
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