FC920902

Overview
NameFC920902
Unique NameFC920902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BURCM (L-threonine 3-dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=tdh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21
Identity = 57/168 (33.93%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L +  ++ P +G  DVL+++    +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI G+GPIG++
Sbjct:   13 LTLTRVKRPEVGHNDVLIKIHRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGVM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BURA4 (L-threonine 3-dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=tdh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.319e-21
Identity = 57/168 (33.93%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L +  ++ P +G  DVL+++    +CG+D+H  K    A   +  PM +GHE  G I ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +  PA   FK+P  +S +  ++ +P     H     N+  E +VLI G+GPIG++
Sbjct:   13 LTLTRVKRPEVGHNDVLIKIHRTAICGTDIHIWKWDDWAQKTIPVPMHVGHEYVGEIVEMGQEVRGFAIGDRVSGEGHITCGFCRNCRAGRRHLCRNTVGVGVNR-EGAFAEYLAIPAFNAFKIPPEISDDLASIFDPFGNATHTALSFNLVGE-DVLITGAGPIGVM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_AGRRK (L-threonine 3-dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.253e-21
Identity = 58/169 (34.32%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ + +P +GP DVL+R++   +CG+DVH     + A   +  PMV+GHE  G I ++GS V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G     V  P      +PD++  E  A+ +P    VH     ++  E +VL+ G+GPIG++
Sbjct:   17 LWMEHVPVPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFCGEIAEIGSAVTKYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVPIPDDIPDEVAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIM 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: YJJN_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjjN OS=Escherichia coli (strain K12) GN=yjjN PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  133 ELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLP-DNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGL 615
            E+P  G  + L+++K+VG+CG+D+H     +        P V+GHE  G I  +G  +  L  G +VA+ P ++C QC  CK GR N C +   +G     G      V  A++   LP D +  +  A+ EP ++  HA RRA I P   VL++G+GPIGL
Sbjct:   21 EIPIPGDNEALIKIKSVGICGTDIHAWGGNQP---FFSYPRVLGHEICGEIVGLGKNIADLKNGQQVAVIPYVACQQCPACKSGRTNCCEKISVIGVHQDGGFSEYLSVPVANI---LPADGIDPQAAALIEPFAISAHAVRRAAIAPGEQVLVVGAGPIGL 176          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_SYMTH (L-threonine 3-dehydrogenase OS=Symbiobacterium thermophilum GN=tdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 59/167 (35.33%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 621
            +Q + +P++GP DVLV+++A  +CG+D H       +   VK P+ IGHE AG +  VG EV     GD V+ E  I C +C  C  G Y+LC  +K LG     G  A  V  P    +    ++  E  ++ EPL   VH     ++    +VLI G GPIG+++
Sbjct:   19 LQEVPIPTIGPRDVLVKVRAASICGTDYHIYTWDPWSAGRVKPPLTIGHELAGEVVAVGREVTACKVGDYVSAETHIVCNRCPRCHMGEYHLCENTKILG-VDTDGAFAEYVAVPEQNIWVNDKDIPFELQSIQEPLGNAVHTALNGDL-TARSVLITGCGPIGIMS 183          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_MESSB (L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (strain BNC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 61/170 (35.88%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ + LP +GP DVL++++   +CG+DVH       A   V  P+V GHE  G +  VGS V     G RV+ E  I C  C  C+ GR +LC  + G+G   VH  G  A  +  P      +PD+V  E  A+ +PL   VH     ++  E +VL+ G+GPIG++
Sbjct:   17 LWMERVPLPEIGPNDVLIKVRKAAICGTDVHIWNWDEWARKTVPVPLVTGHEFVGEVVDVGSAVTEYRIGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVG---VHRPGAFAEYISLPQHNVVAIPDDVPDEIAAIFDPLGNAVHTALSFDLVGE-DVLVTGAGPIGIM 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_PYRKO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus kodakaraensis GN=tdh PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.408e-20
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  130 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +++P  GP +VL+++ A  +CG+D+H  +    A   +K P ++GHE AG + +VG  V+ L  GD +++E  I C +C  CK  RY++C  +K  G   + G  A+  + PA   +K P ++  E  A+ EPL   V       I    + LI G+GP+GL+
Sbjct:   22 VDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTKIFG-VDMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPIAGR-STLITGAGPLGLL 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_COXBU (L-threonine 3-dehydrogenase OS=Coxiella burnetii GN=tdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.408e-20
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 621
            P  G  +VL+++K   +CG+D+H  K    A   +  PM +GHE  G I +VG     L  GDRV+ E  I+C  C  C+ G+ +LC  + G+G + P  G  A  +V PA   +K+P  +S +  A+ +P     H+    ++  E +VLI G+GP+GL++
Sbjct:   21 PKPGRDEVLIKIKKTAICGTDLHIYKWDEWAQKTIPVPMHVGHEFVGEIVEVGEAASALAVGDRVSGEGHITCGDCRNCRAGKRHLCRYTVGVGVNRP--GAFAEYLVIPAKNAYKIPAKISDDIAAILDPFGNAAHSALEFDLVGE-DVLITGAGPVGLMS 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_COXBR (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.408e-20
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 621
            P  G  +VL+++K   +CG+D+H  K    A   +  PM +GHE  G I +VG     L  GDRV+ E  I+C  C  C+ G+ +LC  + G+G + P  G  A  +V PA   +K+P  +S +  A+ +P     H+    ++  E +VLI G+GP+GL++
Sbjct:   21 PKPGRDEVLIKIKKTAICGTDLHIYKWDEWAQKTIPVPMHVGHEFVGEIVEVGEAASALAVGDRVSGEGHITCGDCRNCRAGKRHLCRYTVGVGVNRP--GAFAEYLVIPAKNAYKIPAKISDDIAAILDPFGNAAHSALEFDLVGE-DVLITGAGPVGLMS 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_COXBN (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.408e-20
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 621
            P  G  +VL+++K   +CG+D+H  K    A   +  PM +GHE  G I +VG     L  GDRV+ E  I+C  C  C+ G+ +LC  + G+G + P  G  A  +V PA   +K+P  +S +  A+ +P     H+    ++  E +VLI G+GP+GL++
Sbjct:   21 PKPGRDEVLIKIKKTAICGTDLHIYKWDEWAQKTIPVPMHVGHEFVGEIVEVGEAASALAVGDRVSGEGHITCGDCRNCRAGKRHLCRYTVGVGVNRP--GAFAEYLVIPAKNAYKIPAKISDDIAAILDPFGNAAHSALEFDLVGE-DVLITGAGPVGLMS 179          
The following BLAST results are available for this feature:
BLAST of FC920902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TDH_BURCM6.319e-2133.93L-threonine 3-dehydrogenase OS=Burkholderia ambifa... [more]
TDH_BURA46.319e-2133.93L-threonine 3-dehydrogenase OS=Burkholderia ambifa... [more]
TDH_AGRRK8.253e-2134.32L-threonine 3-dehydrogenase OS=Agrobacterium radio... [more]
YJJN_ECOLI1.078e-2035.80Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_SYMTH1.078e-2035.33L-threonine 3-dehydrogenase OS=Symbiobacterium the... [more]
TDH_MESSB1.078e-2035.88L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (... [more]
TDH_PYRKO1.408e-2033.74Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_COXBU1.408e-2034.57L-threonine 3-dehydrogenase OS=Coxiella burnetii G... [more]
TDH_COXBR1.408e-2034.57L-threonine 3-dehydrogenase OS=Coxiella burnetii (... [more]
TDH_COXBN1.408e-2034.57L-threonine 3-dehydrogenase OS=Coxiella burnetii (... [more]

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Properties
Property NameValue
Genbank descriptionC32014E11EF RVDevelop1 Citrus clementina cDNA clone C32014E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920902 ID=FC920902; Name=FC920902; organism=Citrus clementina; type=EST; length=669bp
ACTTGTGTTTTTTCAGAGTGAAAAGCAAATATGGGCAAGGGAGGGATGTC
ACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTA
TGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGA
CCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGA
TGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGC
CTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGC
GAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGAT
CAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTC
CAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAAT
CAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAG
CCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCT
GCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCA
GGGCCCATAGGACTTGTCACATGCTAGGAGCTCGTGCTTTTNAGCTCCTA
GAATGTCATTGTGGATGTG
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