FC920902

Overview
NameFC920902
Unique NameFC920902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_COXB2 (L-threonine 3-dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.408e-20
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 621
            P  G  +VL+++K   +CG+D+H  K    A   +  PM +GHE  G I +VG     L  GDRV+ E  I+C  C  C+ G+ +LC  + G+G + P  G  A  +V PA   +K+P  +S +  A+ +P     H+    ++  E +VLI G+GP+GL++
Sbjct:   21 PKPGRDEVLIKIKKTAICGTDLHIYKWDEWAQKTIPVPMHVGHEFVGEIVEVGEAASALAVGDRVSGEGHITCGDCRNCRAGKRHLCRYTVGVGVNRP--GAFAEYLVIPAKNAYKIPAKISDDIAAILDPFGNAAHSALEFDLVGE-DVLITGAGPVGLMS 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_RHIME (L-threonine 3-dehydrogenase OS=Rhizobium meliloti GN=tdh PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20
Identity = 59/169 (34.91%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ + +P +GP DVL+R++   +CG+DVH     + A+  +  PMV+GHE  G + +VG  V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G  A  V  P      +PD+V  E  A+ +P    VH     ++  E +VL+ G+GPIG++
Sbjct:   17 LWMERVPVPEIGPNDVLIRVRKSAICGTDVHIWNWDQWAEKTIPVPMVVGHEFMGEVVEVGPAVSKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFAEFVCLPEYNVVSIPDDVPDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIM 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_PSYIN (L-threonine 3-dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=tdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  130 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            ++ P  G  D+L+++    +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+P  +S +  ++ +P    VH+    ++  E +VLI G+GPIG++
Sbjct:   20 VDKPEPGHNDLLIKIHKTAICGTDIHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFSVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRT-GAFAEYLVIPAFNAFKIPAGISDDLASIFDPFGNAVHSALSFDVVGE-DVLITGAGPIGIM 180          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_PYRHO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus horikoshii GN=tdh PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 54/163 (33.13%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  130 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +++P  GP +VL+++ A  +CG+D+H  +    A   +K P ++GHE AG + ++G  V+ +  GD V++E  I C +C  C+ G+Y++C  +K  G     G  A   V PA   +K P ++  E   + EPL   V       I  + +VLI G+GP+GL+
Sbjct:   22 VDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFG-VDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGK-SVLITGAGPLGLL 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_PYRAB (Probable L-threonine 3-dehydrogenase OS=Pyrococcus abyssi GN=tdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  130 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +++P  GP +VL+++ A  +CG+D+H  +    A   +K P ++GHE AG + +VG  V+ +  GD V++E  I C +C  C+ G+Y++C  +K  G     G  A   V PA   +K P ++  E   + EPL   V       I  + +VLI G+GP+GL+
Sbjct:   22 VDVPKPGPGEVLIKVIATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFG-VDTDGVFAEYAVVPAQNVWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGK-SVLITGAGPLGLL 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: RSPB_ECOLI (Starvation-sensing protein rspB OS=Escherichia coli (strain K12) GN=rspB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 62/171 (36.26%), Postives = 89/171 (52.05%), Query Frame = 1
Query:  109 NTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGL 615
            N L I   E+P+    +V V++K  G+CGSD H     R  +   K P VIGHE  GVI+ VG  V++   G+RVA++P +SC  C  C  G+ N+C     LG   VH  G  +   V PA   +K+P+ V+ +   M EP ++  +            VL+ G+GPIGL
Sbjct:   10 NQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIY---RGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAVLG---VHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGL 174          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_SINMW (L-threonine 3-dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=tdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.096e-20
Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L ++ + +P +GP DVL+R++   +CG+DVH     + A   +  PMV+GHE  G I +VG  V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G  A  V  P      +PD+V  E  A+ +P    VH     ++  E +VL+ G+GPIG++
Sbjct:   17 LWMERVPVPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIVEVGPAVTKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFAEFVCLPEYNVVSIPDDVPDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIM 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_THEON (Probable L-threonine 3-dehydrogenase OS=Thermococcus onnurineus (strain NA1) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.349e-20
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  130 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +++P  GP +VL+++ A  +CG+D+H  +    A   +K P ++GHE AG + +VG  V T+  GD ++ E  I C +C  CK  RY++C  +K  G   + G  A   + PA   +K P ++  E   + EPL   V       I    + LI G+GP+GL+
Sbjct:   22 VDIPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVIEVGPGVDTINVGDYISAETHIVCGKCYACKHNRYHVCQNTKIFG-VDMDGVFAEYAIVPAQNAWKNPKDMPPEYATLQEPLGNAVDTVLAGPIAGR-STLITGAGPLGLL 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_RHILO (L-threonine 3-dehydrogenase OS=Rhizobium loti GN=tdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 56/167 (33.53%), Postives = 88/167 (52.69%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            ++ + +P +GP DVL++++   +CG+DVH     + A   V  PMV GHE  G +   G+ V     G RV+ E  I C  C  C+ GR +LC  + G+G + P  G     +  P      +PD+V  E  A+ +PL   VH     ++  E +VL+ G+GPIG++
Sbjct:   19 MEEVPVPEIGPNDVLIKIRKTAICGTDVHIYNWDQWAQKTVPVPMVTGHEFVGTVADFGAAVTEYKVGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVGVNRP--GAFGEYLAIPQHNVVPIPDDVPDEIAAIFDPLGNAVHTALSFDLVGE-DVLVTGAGPIGIM 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_STRAW (L-threonine 3-dehydrogenase OS=Streptomyces avermitilis GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 62/182 (34.07%), Postives = 91/182 (50.00%), Query Frame = 1
Query:   73 EEVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            E+     WLM V          P +GP DVL+++   G+CG+D+H       A   V+ P+V+GHE  G + + G +V  +  GDRV+ E  + C +C  C+ GR +LC  + GLG     G  A  V  PA   +     V L+  A+ +P    VH      +  E +VLI G+GPIGL+
Sbjct:    7 EKAEPGLWLMDVPE--------PEIGPGDVLIKVLRTGICGTDLHIRSWDGWAQQAVRTPLVLGHEFVGEVVETGRDVVDIKAGDRVSGEGHLVCGKCRNCQAGRRHLCRATVGLGVGR-DGAFAEYVALPAANVWVHRVPVDLDVAAIFDPFGNAVHTALSFPLVGE-DVLITGAGPIGLM 178          
The following BLAST results are available for this feature:
BLAST of FC920902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TDH_COXB21.408e-2034.57L-threonine 3-dehydrogenase OS=Coxiella burnetii (... [more]
TDH_RHIME1.839e-2034.91L-threonine 3-dehydrogenase OS=Rhizobium meliloti ... [more]
TDH_PSYIN1.839e-2033.13L-threonine 3-dehydrogenase OS=Psychromonas ingrah... [more]
TDH_PYRHO2.401e-2033.13Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_PYRAB2.401e-2033.74Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
RSPB_ECOLI2.401e-2036.26Starvation-sensing protein rspB OS=Escherichia col... [more]
TDH_SINMW4.096e-2035.50L-threonine 3-dehydrogenase OS=Sinorhizobium medic... [more]
TDH_THEON5.349e-2033.13Probable L-threonine 3-dehydrogenase OS=Thermococc... [more]
TDH_RHILO6.987e-2033.53L-threonine 3-dehydrogenase OS=Rhizobium loti GN=t... [more]
TDH_STRAW9.125e-2034.07L-threonine 3-dehydrogenase OS=Streptomyces avermi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014E11EF RVDevelop1 Citrus clementina cDNA clone C32014E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920902 ID=FC920902; Name=FC920902; organism=Citrus clementina; type=EST; length=669bp
ACTTGTGTTTTTTCAGAGTGAAAAGCAAATATGGGCAAGGGAGGGATGTC
ACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTA
TGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGA
CCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGA
TGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGC
CTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGC
GAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGAT
CAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTC
CAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAAT
CAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAG
CCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCT
GCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCA
GGGCCCATAGGACTTGTCACATGCTAGGAGCTCGTGCTTTTNAGCTCCTA
GAATGTCATTGTGGATGTG
back to top