FC920902

Overview
NameFC920902
Unique NameFC920902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_SILPO (L-threonine 3-dehydrogenase OS=Silicibacter pomeroyi GN=tdh PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 57/161 (35.40%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  136 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +P +GP DVL+++K  G+CG+D+H       A   V  PM+ GHE AG I ++G +V  L  G RV+ E  +   +    + G+++L P ++G+G   V G  A  +  PA     LP+++  E GA+ +PL   VH     ++  E +VLI G+GPIG++
Sbjct:   20 VPEIGPDDVLIKIKKTGICGTDIHIWNWDEWAAHTVPVPMITGHEFAGEIVELGRDVTGLSIGQRVSGEGHLIGTESRQSRAGKFHLDPGTRGIG-VNVQGAFAQYLRLPAFNVVPLPEDIPDEIGAILDPLGNAVHTALSFDLLGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BACSU (L-threonine 3-dehydrogenase OS=Bacillus subtilis GN=tdh PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 53/161 (32.92%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  136 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +P +  ++VL+++KA  +CG+DVH     + A   +K P V GHE +G++E VG  V ++  G+ V+ E  I C +C  C  G+ ++C  +  +G     GC A  V  PAD  ++ P ++     ++ EPL   VH    +     T  +I G GPIGL+
Sbjct:   25 IPEIDKHEVLIKVKAASICGTDVHIYNWDQWARQRIKTPYVFGHEFSGIVEGVGENVSSVKVGEYVSAETHIVCGECVPCLTGKSHVCTNTAIIGVDTA-GCFAEYVKVPADNIWRNPADMDPSIASIQEPLGNAVHTVLESQPAGGTTAVI-GCGPIGLM 183          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_STRGG (L-threonine 3-dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=tdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 60/175 (34.29%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   94 WLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            WLM V          P  GP DVL+++   G+CG+D+H       A   V  P+++GHE  G +  +GS+V  +  GD V+ E  + C +C  C  GR +LC  + GLG     G  A  VV PA   +     V L+  A+ +P    VH      +  E +VLI G+GPIG++
Sbjct:   14 WLMDVPE--------PEYGPTDVLIKVLRTGICGTDLHIRAYDGWAQQAVTTPLILGHEFVGEVAAIGSDVADIATGDLVSGEGHLVCGKCRNCLAGRRHLCRSTVGLGVGR-DGAFAEYVVLPASNVWVHRVPVDLDIAAIFDPFGNAVHTALSFPLVGE-DVLITGAGPIGIM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: GATD_ECOLI (Galactitol-1-phosphate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=gatD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  157 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +V V++ + G+CGSD+  +      +     P+ +GHE +G I+ VGS V  L PGD VA  P + C+ C  C  G Y+ C +   +GS    G  A  +V      F LP ++ +E+GA  EP++VG+HA   A      NV+I+G+G IGL+
Sbjct:   27 EVRVKIASSGLCGSDLPRI----FKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRR-DGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLL 175          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: GATD_ECO57 (Galactitol-1-phosphate 5-dehydrogenase OS=Escherichia coli O157:H7 GN=gatD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 1
Query:  157 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +V V++ + G+CGSD+  +      +     P+ +GHE +G I+ VGS V  L PGD VA  P + C+ C  C  G Y+ C +   +GS    G  A  +V      F LP ++ +E+GA  EP++VG+HA   A      NV+I+G+G IGL+
Sbjct:   27 EVRVKIASSGLCGSDLPRI----FKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRR-DGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLL 175          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BACLD (L-threonine 3-dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 54/161 (33.54%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  136 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            +P +  ++VL+++KA  +CG+DVH       A   VK P V GHE +G + +VG  V T+  G+ V+ E  I C +C  C  G+ ++C ++  LG     GC A  V  PA   +K P  +  +  ++ EPL   VH      +     V ++G GPIGL+
Sbjct:   24 IPKIDKHEVLIKVKAASICGTDVHIYNWDEWAKSRVKPPYVFGHEFSGEVVQVGENVTTVKEGEYVSAETHIVCGKCLPCLTGKEHVCKKTLILG-VDTDGCFAEYVKMPAANIWKNPAGMPEDLASIQEPLGNAVHTV-LTGMTAGVKVAVVGCGPIGLM 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_BACA2 (L-threonine 3-dehydrogenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 51/166 (30.72%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            ++ + +PS+   +VL++++A  +CG+DVH     + A   +K P V GHE +G++ + G  V  +  GD V+ E    C  C  C  G++++C  +K LG     G  A  V  PA   +K P ++     ++ EPL   VH    ++     +  I+G GPIGL+
Sbjct:   19 LKEIPIPSINENEVLIKVQAASICGTDVHIYNWDQWAQKRIKTPQVFGHEFSGIVAETGKHVTNVKTGDYVSAETHFVCGTCVPCLTGKHHVCTHTKILGVDTA-GSFAEYVKVPARNVWKNPADMDPAVASVQEPLGNAVHTVLESSQLAGGSAAIIGCGPIGLM 183          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_STRCO (L-threonine 3-dehydrogenase OS=Streptomyces coelicolor GN=tdh PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 55/160 (34.38%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  139 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            P++G  DVL+++   G+CG+D+H       A   ++ P+V+GHE  G +   G +V  +  GDRV+ E  + C +C  C  GR +LC  + GLG     G  A  V  PA   +     V L+  A+ +P    VH      +  E +VLI G+GPIGL+
Sbjct:   21 PTIGSGDVLIKVLRTGICGTDLHIRAWDGWAQQAIRTPLVVGHEFVGEVVDTGRDVTDIKAGDRVSGEGHLVCGKCRNCLAGRRHLCRATVGLGVGR-DGAFAEYVALPASNVWVHRVPVDLDVAAIFDPFGNAVHTALSFPLVGE-DVLITGAGPIGLM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_SACEN (L-threonine 3-dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tdh PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 60/170 (35.29%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            L++  L  P+ G  D++V++   G+CG+D+H       A   V  P+VIGHE AG +  VGS V     GD V+ E  + C  C  C+ GR +LC  ++GLG   VH  G  A   V P    +   ++V  +  A+ +P    VH      +  E +VLI G+GPIGL+
Sbjct:   13 LELTELPDPTPGANDIVVQVFRTGICGTDLHIDSWDEWAARTVPTPLVIGHEFAGEVVAVGSAVTQAQVGDFVSGEGHLVCGTCRNCRAGRRHLCANTRGLG---VHHNGAFAEYAVLPEQNVWVHREHVDPDVAAIFDPFGNAVHTALTFPVVGE-DVLITGAGPIGLM 178          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: TDH_THETN (L-threonine 3-dehydrogenase OS=Thermoanaerobacter tengcongensis GN=tdh PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  133 ELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLV 618
            E+P +GP +VL+++KA  +CG+DVH       A   +K P  +GHE  G + ++G  V ++  GD V+ E  I C +C  C+ G  ++C  +  LG     G  A  +  P    +    N+ LE  ++ EPL   VH     ++  + +V ++G GPIG++
Sbjct:   23 EIPKIGPDEVLIKVKATSICGTDVHIYVWNEWAKSRIKPPKTMGHEFVGEVVEIGENVTSVKVGDLVSAETHIVCGKCRACRTGNAHICENTLILG-VDTDGAFAEYIKVPESNVWINDKNIPLEILSIQEPLGNAVHTVFSGDVVGK-SVAVIGCGPIGMM 182          
The following BLAST results are available for this feature:
BLAST of FC920902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
TDH_SILPO9.125e-2035.40L-threonine 3-dehydrogenase OS=Silicibacter pomero... [more]
TDH_BACSU3.467e-1932.92L-threonine 3-dehydrogenase OS=Bacillus subtilis G... [more]
TDH_STRGG4.529e-1934.29L-threonine 3-dehydrogenase OS=Streptomyces griseu... [more]
GATD_ECOLI1.009e-1836.36Galactitol-1-phosphate 5-dehydrogenase OS=Escheric... [more]
GATD_ECO571.009e-1836.36Galactitol-1-phosphate 5-dehydrogenase OS=Escheric... [more]
TDH_BACLD2.935e-1833.54L-threonine 3-dehydrogenase OS=Bacillus lichenifor... [more]
TDH_BACA22.935e-1830.72L-threonine 3-dehydrogenase OS=Bacillus amylolique... [more]
TDH_STRCO3.834e-1834.38L-threonine 3-dehydrogenase OS=Streptomyces coelic... [more]
TDH_SACEN3.834e-1835.29L-threonine 3-dehydrogenase OS=Saccharopolyspora e... [more]
TDH_THETN5.007e-1831.48L-threonine 3-dehydrogenase OS=Thermoanaerobacter ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014E11EF RVDevelop1 Citrus clementina cDNA clone C32014E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920902 ID=FC920902; Name=FC920902; organism=Citrus clementina; type=EST; length=669bp
ACTTGTGTTTTTTCAGAGTGAAAAGCAAATATGGGCAAGGGAGGGATGTC
ACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTA
TGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGA
CCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGA
TGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGC
CTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGC
GAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGAT
CAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTC
CAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAAT
CAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAG
CCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCT
GCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCA
GGGCCCATAGGACTTGTCACATGCTAGGAGCTCGTGCTTTTNAGCTCCTA
GAATGTCATTGTGGATGTG
back to top