FC920902

Overview
NameFC920902
Unique NameFC920902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH_RALEU (Alcohol dehydrogenase OS=Ralstonia eutropha GN=adh PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 57/196 (29.08%), Postives = 86/196 (43.88%), Query Frame = 1
Query:   88 AAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRV------------ALEPGISCWQCDYCKGGRYNLCPESKGLG----SPPVHGCLANQVVHP---ADLCFKLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGL 615
            AA  +    +++    +P +GP D LVR+    +CG+DVH LK     ++ V + + +GHE  G+IEK+GS V     G RV            A + G++     Y        C   K          + G  A  V+ P   A+L   +PD ++ E+  MC + +S G      ANI     V +   GPIGL
Sbjct:    7 AAVFVEPGRIELADKPIPDIGPNDALVRITTTTICGTDVHILK----GEYPVAKGLTVGHEPVGIIEKLGSAVTGYREGQRVIAGAICPNFNSYAAQDGVASQDGSYLMASGQCGCHGYKATAGWRFGNMIDGTQAEYVLVPDAQANLT-PIPDGLTDEQVLMCPDIMSTGFKGAENANIRIGHTVAVFAQGPIGL 197          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADHA_RHIME (Alcohol dehydrogenase OS=Rhizobium meliloti GN=adhA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 56/173 (32.37%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVK--EPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI--SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGV---HACRRANIGPETNVLIMGSGPIG 612
            L I+ + +P  GP  VL++ +A GVC +D+H  K     D+ V+   P + GHE  G + K+G+EV  L  GDRV + P +  +C  C  C+ G   LC   +  G   V G  A   +   D   +LP    LE G     L  GV      +   + P   VL+ G G +G
Sbjct:   15 LVIEEVPVPQPGPGQVLIKYEATGVCHTDLHAAK----GDWPVRPNPPFIPGHEGVGYVAKLGAEVTRLKEGDRVGV-PWLHTACGCCTPCRTGWETLCGSQQNTGY-SVDGTFAQYGLADPDFVGRLP--ARLEFGPAAPVLCAGVTVYKGLKETEVRPGEWVLVSGIGGLG 179          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1
Query:   88 AAWLMGVNT-LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPES 408
            AA L G N    I+ +E+      +V V++ A G+CG+D H +K   ++ F    P+++GHE  G++E VG EV T+ PGD+V       C +C+ C+    NLC  S
Sbjct:   12 AAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKGTMVSKF----PVIVGHEAVGIVESVGEEVTTVRPGDKVIPLFLPQCRECNPCRNPEGNLCIRS 115          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH3_EMENI (Alcohol dehydrogenase 3 OS=Emericella nidulans GN=alcC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  136 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVV--KEPMVIGHECAGVIEKVGSEVK--TLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSG 603
            +P  GP ++LV+M+  GVC +D+H +K     D+ +  K P++ GHE AGV+   G  VK      GDR  ++    SC  C+ C      LCP +  L    V G      +  A L  K+PDNV L+  A  +C  ++V     + +   P   V I+G+G
Sbjct:   26 VPKPGPDEILVKMRYSGVCHTDLHAMK----GDWPLPSKMPLIGGHEGAGVVVAKGELVKDEDFKIGDRAGIKWLNGSCLSCEMCMQADEPLCPHA-SLSGYTVDGTFQQYTIGKAALASKIPDNVPLDAAAPILCAGITV-YKGLKESGARPGQTVAIVGAG 182          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: FADH_PSEAE (Glutathione-independent formaldehyde dehydrogenase OS=Pseudomonas aeruginosa GN=fdhA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 58/217 (26.73%), Postives = 96/217 (44.24%), Query Frame = 1
Query:   82 NMAAWLMGVNTLKIQPLELPSLGP-------YDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC----PESKG--LGSPPVHGCLANQ----VVHPADL-CFKLPDNVSLEE-----GAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTC*ELVLXSS*NVIV 663
            N     +G   +++Q +  P +         + V++R+ +  +CGSD H ++    A     E +V+GHE  G + ++G  V+T+  GD V++   ++C  C  CK     +C    P   G   G   + G +  Q    +V  AD    KLP+  +  E       + + L  G H    A +GP + V I G+GP+GL       L  +  VIV
Sbjct:    4 NRGVVYLGPGKVEVQNIPYPKMQDPQGRQIDHGVILRVVSTNICGSDQHMVRGRTTAP----EGLVLGHEITGEVVEIGRGVETMKIGDLVSVPFNVACGHCRTCKEQHTGVCLTVNPARAGGAYGYVDMGGWVGGQAEYVLVPYADFNLLKLPNREAAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASARLLGAAVVIV 216          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH_STAES (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=adh PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGV---HACRRANIGPETNVLIMGSGPIG 612
            + I+   L  L P + LV+ +  GVC +D+H    ++ ADF     + +GHE  G + K+   V +L  GDRV++     +C  C+YC  GR  LC +    G   V G +A +V+  A+   K+P+N  L+  A       GV    A + + I P   + + G G +G
Sbjct:   12 VSIEEKRLRELRPGEALVKTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGRVIKIADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGY-TVDGAMAEEVIVDANYAVKVPEN--LDPAAASSITCAGVTTYKAVKVSGIEPGQWLGVFGVGGLG 174          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 53/189 (28.04%), Postives = 83/189 (43.92%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---------SKGLGSPPVHGCLANQVVHPADL----CFKLPDNVSLEEGAMCEPLSV---------GVHACRRANIGPETNVLIMGSGPIGL 615
            L I+ +E+      +V ++M A GVCG+D+  L T  L+ F    PM++GHE  G++E VG  V ++  GD+V L     C +C  C   + N+C E         S+G       G L +Q +           K      ++EGA  E + +         G  A   A + P +   + G G +GL
Sbjct:   22 LAIEEIEVAPPKAKEVRIKMVATGVCGTDIKHLDTQELSKFC---PMIMGHEGVGIVESVGEGVSSVRTGDKVILLCIPQCGECKTCLNSKNNICTEIRLSKTHLASEGTSRITCKGKLVHQYIALGSFSEYTVLKEISVAKIDEGAPLEKVCIIGCGFATGYGA-AINSAKVTPGSTCAVFGLGGVGL 206          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: FADH_METMR (S-(hydroxymethyl)glutathione dehydrogenase OS=Methylobacter marinus GN=fdh PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 53/183 (28.96%), Postives = 78/183 (42.62%), Query Frame = 1
Query:  151 PYDVLVRMKAVGVCGSDVH----FLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPES--------KGLGSPP---------VHGCLANQV---------VHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPI 609
            P D +V++ A  +CGSD+H    ++ T+   D       ++GHE  G + +VGSEV +L  GDRV +   ISC  C +C+   Y+ C  S        K +G  P         + G    Q          V P  +   LPD+  L    + +    G  A   A I P   V + G GP+
Sbjct:   25 PTDAIVKITATAICGSDLHLYDGYMPTMESGD-------ILGHEPMGEVVEVGSEVTSLKTGDRVVVPFTISCGHCFFCEKTLYSCCDTSNPNADMARKAMGHSPAGIFGYSHMLGGFAGGQAEYLRVPYADVGPIKITSDLPDDKVL---FLSDIFPTGYMAAENAQIEPGDTVAVWGCGPV 197          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH_STAEQ (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=adh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGV---HACRRANIGPETNVLIMGSGPIG 612
            + I+   L  L P + LV+ +  GVC +D+H    ++ ADF     + +GHE  G + +V   V +L  GDRV++     +C  C+YC  GR  LC +    G   V G +A +V+  A+   K+P+N  L+  A       GV    A + + I P   + + G G +G
Sbjct:   12 VSIEEKRLRELKPGEALVKTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGRVIEVADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGY-TVDGAMAEEVIVDANYAVKVPEN--LDPAAASSITCAGVTTYKAVKVSGIEPGQWLGVFGVGGLG 174          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 54/187 (28.88%), Postives = 84/187 (44.92%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK-----GL-----------GSPPVH----GCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGL 615
            I  +E+     ++V +++ A G+C SD H L      +F    P+++GHE AGV+E VG  V ++ PGD+V       C +C+ C+  R N+C +S+     GL           G P  H    G      V P D   K+  +  LE+  +     S G  A    A + P +   + G G +GL
Sbjct:   23 IVEIEVAPPKAHEVRIKILASGICRSDDHVLSGALKVNF----PIILGHEAAGVVESVGEGVTSMKPGDKVIPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLYDGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGYGAAINSAKVQPGSTCAVFGLGGVGL 205          
The following BLAST results are available for this feature:
BLAST of FC920902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
ADH_RALEU7.003e-1229.08Alcohol dehydrogenase OS=Ralstonia eutropha GN=adh... [more]
ADHA_RHIME7.003e-1232.37Alcohol dehydrogenase OS=Rhizobium meliloti GN=adh... [more]
ADH7_RAT7.003e-1236.11Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH3_EMENI7.003e-1232.52Alcohol dehydrogenase 3 OS=Emericella nidulans GN=... [more]
FADH_PSEAE9.146e-1226.73Glutathione-independent formaldehyde dehydrogenase... [more]
ADH_STAES9.146e-1230.59Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH6_RAT9.146e-1228.04Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
FADH_METMR2.038e-1128.96S-(hydroxymethyl)glutathione dehydrogenase OS=Meth... [more]
ADH_STAEQ2.038e-1130.59Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH1B_UROHA2.038e-1128.88Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]

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Properties
Property NameValue
Genbank descriptionC32014E11EF RVDevelop1 Citrus clementina cDNA clone C32014E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920902 ID=FC920902; Name=FC920902; organism=Citrus clementina; type=EST; length=669bp
ACTTGTGTTTTTTCAGAGTGAAAAGCAAATATGGGCAAGGGAGGGATGTC
ACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTA
TGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGA
CCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGA
TGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGC
CTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGC
GAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGAT
CAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTC
CAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAAT
CAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAG
CCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCT
GCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCA
GGGCCCATAGGACTTGTCACATGCTAGGAGCTCGTGCTTTTNAGCTCCTA
GAATGTCATTGTGGATGTG
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