FC920902

Overview
NameFC920902
Unique NameFC920902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:20..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH_MYCTU (Probable alcohol dehydrogenase adh OS=Mycobacterium tuberculosis GN=adh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 59/184 (32.07%), Postives = 82/184 (44.57%), Query Frame = 1
Query:  115 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKT---LVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPPVH-------GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETN----VLIMGSGPIGL 615
            L ++   LP +G  D LVR++A G+CG+D H   T  LA      P   GHE  G I  +G   +    +  GDRVA+E   SC QC  C+GG Y  C     +   G  PV        G    Q + P  +  ++  ++S E   +  PL  G+   R     PET     V ++G G  GL
Sbjct:   18 LVVRQYRLPRIGDDDALVRVEACGLCGTD-HEQYTGELAGGFAFVP---GHETVGTIAAIGPRAEQRWGVSAGDRVAVEVFQSCRQCANCRGGEYRRCVRHGLADMYGFIPVDREPGLWGGYAEYQYLAPDSMVLRVAGDLSPEVATLFNPLGAGI---RWGVTIPETKPGDVVAVLGPGIRGL 194          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH1_ZYMMO (Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=adhA PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 49/178 (27.53%), Postives = 87/178 (48.88%), Query Frame = 1
Query:   88 AAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNV--SLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIG 612
            AA +   +T++++  +L  L   + L+ M+  GVC +D+H    ++  DF  +   + GHE  G++++VG  V +L  GDR ++      C  C+YC  G   LC   +  G   V G +A + +  AD   K+PD +  ++     C  ++    A + + I P   + I G G +G
Sbjct:    3 AAVITKDHTIEVKDTKLRPLKYGEALLEMEYCGVCHTDLH----VKNGDFGDETGRITGHEGIGIVKQVGEGVTSLKVGDRASVAWFFKGCGHCEYCVSGNETLCRNVENAGY-TVDGAMAEECIVVADYSVKVPDGLDPAVASSITCAGVTT-YKAVKVSQIQPGQWLAIYGLGGLG 174          
BLAST of FC920902 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  121 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP 426
            I+ +E+     Y+V ++M AVG+C +D H +      + V   P+++GHE AG++E VG  V T+ PGD+V       C +C  CK    N C ++  LG+P
Sbjct:   24 IEDVEVAPPKAYEVRIKMVAVGICRTDDHVVS----GNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKN-DLGNP 120          
The following BLAST results are available for this feature:
BLAST of FC920902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
ADH_MYCTU5.928e-1132.07Probable alcohol dehydrogenase adh OS=Mycobacteriu... [more]
ADH1_ZYMMO5.928e-1127.53Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=ad... [more]
ADH1B_HUMAN5.928e-1135.29Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]

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Properties
Property NameValue
Genbank descriptionC32014E11EF RVDevelop1 Citrus clementina cDNA clone C32014E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920902 ID=FC920902; Name=FC920902; organism=Citrus clementina; type=EST; length=669bp
ACTTGTGTTTTTTCAGAGTGAAAAGCAAATATGGGCAAGGGAGGGATGTC
ACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTA
TGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGA
CCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGA
TGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGC
CTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGC
GAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGAT
CAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTC
CAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAAT
CAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAG
CCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCT
GCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCA
GGGCCCATAGGACTTGTCACATGCTAGGAGCTCGTGCTTTTNAGCTCCTA
GAATGTCATTGTGGATGTG
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