FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.647e-74
Identity = 132/165 (80.00%), Postives = 143/165 (86.67%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.792e-74
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MP D +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.792e-74
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MP D +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.792e-74
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MP D +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.792e-74
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MP D +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.258e-74
Identity = 131/165 (79.39%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MP D +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 8.174e-74
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD +VG   DAF TFFSETG+G+HVPRA+FVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVFSAV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFYTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.068e-73
Identity = 129/165 (78.18%), Postives = 143/165 (86.67%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQ+GN+CWELYCLEHGIQP+G MPSD +VG   DAFNTFFSETG+G+HVPRA+FVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQIGNACWELYCLEHGIQPNGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.068e-73
Identity = 130/165 (78.79%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MP D +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKL+DNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.394e-73
Identity = 129/165 (78.18%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPR VF+DLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA2_ARATH1.647e-7480.00Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA_PRUDU4.792e-7479.39Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA6_ARATH4.792e-7479.39Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA3_HORVU4.792e-7479.39Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA1_PEA4.792e-7479.39Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA2_ORYSJ6.258e-7479.39Tubulin alpha-2 chain OS=Oryza sativa subsp. japon... [more]
TBA1_GOSHI8.174e-7479.39Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA_DAUCA1.068e-7378.18Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 S... [more]
TBA2_HORVU1.068e-7378.79Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]
TBA_CHLVU1.394e-7378.18Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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