FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 5.310e-65
Identity = 113/165 (68.48%), Postives = 133/165 (80.61%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+F TFF ETG+G+HVPRAVFVDLEP+VIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+D  LDR+RKL+D CTGLQGFLVF +                  VDYGKKSKL F+IY
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.708e-63
Identity = 111/165 (67.27%), Postives = 130/165 (78.79%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+F TFF ETG+G+HVPRA+FVDLEP+VIDEVR G YRQLFHPEQLI+GKED ANN+ARGHYT+G+EI+D  LDR+RKLAD CTGLQGFL F +                   DYGKKSKL F+IY
Sbjct:    8 HVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKSKLEFSIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.076e-61
Identity = 104/165 (63.03%), Postives = 135/165 (81.82%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDGTMP+ ++     ++F TFFS+TGSG++VPR++FVDLEP+V+DE+RTG+Y++LFHPEQ+I+GKEDAANN+ARGHYTVG+E++D  LDR+R+LADNC+GLQGF VF +                  VDYGKKSKL F+IY
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 170
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.768e-60
Identity = 104/165 (63.03%), Postives = 131/165 (79.39%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG Q+GN+CWELYCLEHGI+PDG +  + +     D F+TFFSETGSG++VPR+++VDLEP+VID+VRTG+YR LFHPEQLI+GKEDAANN+ARGHYTVG+E++D  LDR+R++ADNCTGLQGFLVF +                  VDYGKKSKL F++Y
Sbjct:    8 HVGQAGTQIGNACWELYCLEHGIEPDGRLSPEKTTKPLDDGFSTFFSETGSGKYVPRSIYVDLEPNVIDQVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKELIDHVLDRIRRVADNCTGLQGFLVFHSFGGGTGSGFGALLLERLSVDYGKKSKLEFSVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.553e-59
Identity = 106/165 (64.24%), Postives = 127/165 (76.97%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWEL+CLEHGIQ DGT  +  S     D+F TFFSETG+G+HVPRAV VDLEP+V+DEVR G+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+E +DL LDR+RKL D C+GLQGFL+F +                  +DYGKKSKL F IY
Sbjct:    8 HVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.553e-59
Identity = 106/165 (64.24%), Postives = 127/165 (76.97%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWEL+CLEHGIQ DGT  +  S     D+F TFFSETG+G+HVPRAV VDLEP+V+DEVR G+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+E +DL LDR+RKL D C+GLQGFL+F +                  +DYGKKSKL F IY
Sbjct:    8 HVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.553e-59
Identity = 105/165 (63.64%), Postives = 127/165 (76.97%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWEL+CLEHGIQ DGT  +  S     D+F TFFSETG+G+HVPRAV +DLEP+V+DEVR G+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+E +DL LDR+RKL D C+GLQGFL+F +                  +DYGKKSKL F IY
Sbjct:    8 HVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.700e-59
Identity = 105/165 (63.64%), Postives = 126/165 (76.36%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWEL+CLEHGIQ DGT  +  S     D+F TFFSETG+G+HVPRAV VDLEP+V+DEVR G+YR LFHPEQLI+GKEDAANN+ARGHYTVG+E +DL LDR+RKL D C+GLQGFL+F +                  +DYGKKSKL F IY
Sbjct:    8 HVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKIHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRHLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.686e-58
Identity = 102/165 (61.82%), Postives = 127/165 (76.97%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGI PDG++  D +     DAF+TFFSET +G+ VPR VF+DLE  VIDEV+ G Y+ L+HPEQLI G EDAANN+ARGHYT+G+EI+++ LDR+RKL +NC+GLQGFL+F++V                 +DYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGINPDGSIIQDFNKKKNDDAFSTFFSETSTGKRVPRCVFLDLESGVIDEVKNGRYKNLYHPEQLICGNEDAANNYARGHYTIGKEIIEIALDRIRKLVENCSGLQGFLIFNSVGGGTGSGLGSLLLERLSLDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.323e-57
Identity = 99/165 (60.00%), Postives = 124/165 (75.15%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++GQAG Q+ NSCWELYCLEHGIQPDG +  +         FNTFFSETG G++VPR ++ DLEP+V+DEVRTG YR LFHPEQ+I+GKEDA+NN+ARGHYTVG+E++D CLD+VR++ADNC+GLQGFLVF +                  VDYGKK+KL F +Y
Sbjct:    8 NVGQAGGQIANSCWELYCLEHGIQPDGYLTEERKAADPDQGFNTFFSETGQGKYVPRTIYCDLEPNVVDEVRTGPYRALFHPEQMITGKEDASNNYARGHYTVGKEMIDQCLDKVRRVADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVY 172
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA4A_BOVIN5.310e-6568.48Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA5_CHICK1.708e-6367.27Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA2_CAEEL6.076e-6163.03Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA1_PNECA1.768e-6063.03Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA8_RAT2.553e-5964.24Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE2.553e-5964.24Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN2.553e-5963.64Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_BOVIN9.700e-5963.64Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBAN_GUITH3.686e-5861.82Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA_AJECA5.323e-5760.00Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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