FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.023e-56
Identity = 98/165 (59.39%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++GQAG Q+ NSCWELYCLEHGIQPDG +  +         F+TFFSETG+G+HVPRA++ DLEP+V+DEVRTG+YR LFHPE +I+GKEDA+NN+ARGHYTVG+E++D  LD++R++ADNC GLQGFLVF +                  VDYGKKSKL F +Y
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAQDPDQGFSTFFSETGNGKHVPRAIYCDLEPNVVDEVRTGAYRNLFHPEMMITGKEDASNNYARGHYTVGKELIDGVLDKIRRVADNCAGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVY 172          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.450e-56
Identity = 99/165 (60.00%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++GQAG Q+ NSCWELYCLEHGIQPDG +  +         F+TFFSETG+G++VPR ++ DLEP+VIDEVRTG+YR LFHPE +ISGKEDA+NN+ARGHYTVG+E++D  LD+VR++ADNC+GLQGFLVF +                  VDYGKKSKL F +Y
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVY 172          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.450e-56
Identity = 99/165 (60.00%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++GQAG Q+ NSCWELYCLEHGIQPDG +  +         F+TFFSETG+G++VPR ++ DLEP+VIDEVRTG+YR LFHPE +ISGKEDA+NN+ARGHYTVG+E++D  LD+VR++ADNC+GLQGFLVF +                  VDYGKKSKL F +Y
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVY 172          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.885e-56
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 2
Query:  203 CWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGL 541
            CWELY LEHGIQPDG MPSDT+VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG EIVDLCLDRVRKLADNCTGL
Sbjct:    1 CWELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNCTGL 113          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 5.885e-56
Identity = 98/165 (59.39%), Postives = 127/165 (76.97%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG Q+GN+CWELYCLEHGIQP+G M  +T+       F+TFFSETG G++VPR+++VDLEP+VID+VRTG YR LFHPEQLI+GKEDA+NN+ARGHYTVG+E+VD   D++R++ADNC+GLQGFLVF +                  ++Y KKSKL F++Y
Sbjct:    8 HVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVY 172          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.004e-55
Identity = 97/165 (58.79%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++GQAG Q+ NSCWELYCLEHGIQPDG +  +       D F+TFFSETG+G++VPR ++ DLEP+V+DEVRTG+YR LFHPE +I+GKEDA+NN+ARGHYTVG+E++D  LD+VR +ADNC+GLQGFLVF +                  VDYGKK KL F +Y
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAAEDDDGFSTFFSETGNGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPELMITGKEDASNNYARGHYTVGKELIDQVLDKVRHVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKCKLEFCVY 172          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.815e-55
Identity = 103/171 (60.23%), Postives = 130/171 (76.02%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSD----TSVGACHDAFNTFFSETGSGQHV-PRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDY-GKKSKLGFTIY 661
            HIGQAG+QVGNSCWELYCLEHGI+ DG++P+D    + V   +    TFFSE+ +G+ V PRA+F+DLEP+VIDE+RTG Y+ LFHPEQLI+GKEDAANN+ARGHYTVG+E++D+C+DR+R+LAD C GLQGFLVF +V                 +DY GKKSKL F +Y
Sbjct:    9 HIGQAGVQVGNSCWELYCLEHGIERDGSIPADRKQSSDVNNLNKDLGTFFSESTNGKKVVPRAIFLDLEPTVIDEIRTGDYKNLFHPEQLITGKEDAANNYARGHYTVGKELIDVCVDRIRRLADQCDGLQGFLVFHSVGGGTGSGFGSLLLQKLALDYGGKKSKLDFCVY 179          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.815e-55
Identity = 101/165 (61.21%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG+Q+GN+CWEL+CLEH IQPDGT     S     D+F TFF ET   ++VPRA+ VDLEP+V+DEVRTG+YR LFHPEQLI+GKEDAANN+ARGHYTVG++ VD+  DR+RKLAD+C+GLQGFL+F +                  V+YGKKSKL F IY
Sbjct:    8 HIGQAGVQIGNACWELFCLEHSIQPDGTFSDPPS---SDDSFATFFRETSMSKYVPRAIMVDLEPTVVDEVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKDKVDMVSDRIRKLADSCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVEYGKKSKLEFAIY 169          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 4.982e-55
Identity = 97/165 (58.79%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++GQAG Q+ NSCWELYCLEHGIQPDG +  +         F+TFFSETG G++VPR ++ DLEP+V+DEVRTG+YR LFHPE LI+GKEDA+NN+ARGHYTVG+E++D  LD+VR++AD+C+GLQGFLVF +                  VDYGKKSKL F +Y
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKKEDPDHGFSTFFSETGQGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPENLITGKEDASNNYARGHYTVGKEMIDQVLDKVRRMADSCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVY 172          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.110e-54
Identity = 95/169 (56.21%), Postives = 127/169 (75.15%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSV----GACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGI PDG    ++ V       +D F TFFSETG G+ VPR+++VDLEP+VID+VRTG Y+ LFHPEQ+++GKEDA+NN+ARGHYTVG+E++D  L+R+R++ADNC+GLQGFLVF +                  ++YGKKS L F++Y
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVY 176          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA_GIBZE2.023e-5659.39Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_SORMA3.450e-5660.00Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA2_NEUCR3.450e-5660.00Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA_PICAB5.885e-5690.27Tubulin alpha chain (Fragment) OS=Picea abies GN=T... [more]
TBA2_SCHPO5.885e-5659.39Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA_MYCGR1.004e-5558.79Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA_DICDI3.815e-5560.23Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA2_CHICK3.815e-5561.21Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA1_EMENI4.982e-5558.79Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA1_SCHPO1.110e-5456.21Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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