FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.128e-49
Identity = 91/165 (55.15%), Postives = 116/165 (70.30%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG Q+GNS WELY LEHG+  DG             ++ TFF+ET +G++VPR++FVDL+PS IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYT+G+E+VD  +DR+R++ADNC  LQGFL+F +                   +YGKKSKL F +Y
Sbjct:    9 HLGQAGTQLGNSAWELYLLEHGLGHDGRPDPSAKDVVDGGSYETFFTETSNGKYVPRSLFVDLDPSPIDEIRTGGYRQLFHPELLISGKEDAANNYARGHYTIGKEMVDNVIDRIRRVADNCHSLQGFLIFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVY 173          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.899e-48
Identity = 91/132 (68.94%), Postives = 106/132 (80.30%), Query Frame = 2
Query:  266 SVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+DL LDR+RKLAD CTGLQGF VF +                  VDYGKKSKL F+IY
Sbjct:    2 TIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.314e-47
Identity = 88/172 (51.16%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPS-------DTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG+Q+G++CWELYCLEHGIQPDG +         +  V   + + +TFF ET +G+HVPR +F+DLEP+VID +R G Y  LFHPEQL++GKEDAAN +ARG Y+VG E+++L L+R+RKLA+ C+GLQGFL++ +                  V+Y KK KL F++Y
Sbjct:    8 HIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFFHETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSEVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVY 179          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.112e-46
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG+Q+GN+CWELYC EHGI P+G +  +       ++  +FFS T  G +VPR + VDLEP V+D ++TG YR+L+HP QLISGKEDAANN+ARGHYTVG+EI++  ++++R++AD+C GLQGFL++ +                   ++GKKSKL F++Y
Sbjct:    8 HIGQAGVQIGNACWELYCKEHGILPNGQLDQNKMDD---ESAESFFSPTSVGTYVPRTLMVDLEPGVLDSIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPAMEQIRRMADSCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVY 169          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.606e-45
Identity = 90/176 (51.14%), Postives = 119/176 (67.61%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMP---------SDTSVG---ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            IGQ GIQ+GN+CWELY LEHGI  DG++          S  SVG   + +DA  TFF+ETG+G+ VPR++FVDLEP+VID+VR G  R+L+HPEQLISGKEDAANN+ARG Y++G+E++D    R++K+A+ C  LQGFL+F ++                  DY KK KL F +Y
Sbjct:    9 IGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDA-RTFFTETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVY 183          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.167e-44
Identity = 84/165 (50.91%), Postives = 112/165 (67.88%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQ G   W L C EHGI  DGT  S ++ G  +   +  FSE   G++VPR + VDLEPSV+D VR  SY++L+HP Q+I+G+EDAANNFARGHYTVG++++D+ +DR+RK+ADNCT LQGF +F +V                 V++ KK KL +T+Y
Sbjct:    8 HIGQAGIQAGEQVWSLMCAEHGINQDGTRNSTSANG--NSDCSVLFSEGSRGKYVPRNLMVDLEPSVVDSVRNSSYKELYHPAQMITGREDAANNFARGHYTVGKDMLDVTVDRLRKIADNCTSLQGFQIFHSVGGGTGSGFASLLVERLSVEFPKKCKLSYTVY 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.654e-40
Identity = 81/171 (47.37%), Postives = 111/171 (64.91%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTS------VGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            +IGQAG Q+GN CWEL+CLEHGIQPDGT  ++++       G    A+N FF E  +G+HVPRA+FVD EP+VIDE++TG Y  L+HPE LI GKEDA++NFA+G  T    +++  +D +RK  +NCTGLQGF ++++V                   Y KK+KL   I+
Sbjct:    8 NIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIW 177          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.237e-38
Identity = 72/150 (48.00%), Postives = 103/150 (68.67%), Query Frame = 2
Query:  212 LYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            LYC EHGI PDG +  +       ++  +FFS+T  G +VPR + VDLEP V++ ++TG YR+L+HP QLISGKEDAANN+ARGHYTVG+EI++  ++++R++ADNC GLQGFL++ +                   ++GKKSKL F++Y
Sbjct:    1 LYCKEHGILPDGRLDQNRMDD---ESAESFFSQTSVGTYVPRTLMVDLEPGVLESIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPVMEQIRRMADNCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVY 147          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.724e-31
Identity = 67/87 (77.01%), Postives = 70/87 (80.46%), Query Frame = 2
Query:  401 LFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            LFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLDRVRKL+DNCTGLQGFLVF+AV                 VDYGKKSKLGFTIY
Sbjct:    1 LFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIY 87          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.247e-30
Identity = 64/163 (39.26%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI P G    DT +    +  N +++E   G++VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:    8 GQCGNQIGAKFWEVVCAEHGIDPTGRYGGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 168          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA_GLOLA3.128e-4955.15Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBA1_CHICK5.899e-4868.94Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBAL3_MOUSE1.314e-4751.16Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA_ENCCU1.112e-4650.30Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA4_DROME1.606e-4551.14Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBA6_NAEGR5.167e-4450.91Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA1_ENTHI2.654e-4047.37Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA_ENCHE4.237e-3848.00Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]
TBA2_ANEPH1.724e-3177.01Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBB2_PEA4.247e-3039.26Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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