FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.821e-73
Identity = 132/165 (80.00%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGNSCWELYCLEHGIQPDG MPSDTS+G   DAFNTFFSETG+G+HVPRA+FVDLEP+VIDEV+TG YRQLFHPEQLIS KEDAANNFARGHYTVGREIVD CLDR+RKLADNCTGLQGFLVF+AV                 VDYG+KSKLGFTIY
Sbjct:    8 HIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSLGVARDAFNTFFSETGAGKHVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLISYKEDAANNFARGHYTVGREIVDPCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.378e-73
Identity = 129/165 (78.18%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MP D +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKL+DNCTGLQGFLVF+AV                 VDYG+KSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.298e-73
Identity = 129/165 (78.18%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQ DG MP D ++G   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.298e-73
Identity = 126/165 (76.36%), Postives = 143/165 (86.67%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG+QVGN+CWELYCLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVFS+V                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGVQVGNACWELYCLEHGIQPDGLMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.298e-73
Identity = 129/165 (78.18%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQ DG MP D ++G   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.298e-73
Identity = 129/165 (78.18%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQ DG MP D ++G   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.037e-73
Identity = 127/165 (76.97%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQ GIQVGN+CWEL+CLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF++V                 VDYGKKSKLGFTIY
Sbjct:    8 HVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.037e-73
Identity = 127/165 (76.97%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQ GIQVGN+CWEL+CLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF++V                 VDYGKKSKLGFTIY
Sbjct:    8 HVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.180e-72
Identity = 126/165 (76.36%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQ GIQ+GN+CWELYCLEHGIQPDG+MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEPSV+DEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFL F AV                 VDYGKKSKLGFTIY
Sbjct:    8 HLGQGGIQIGNACWELYCLEHGIQPDGSMPSDKAIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPSVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLAFHAVGGGTGSGLGRLLLERLSVDYGKKSKLGFTIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.542e-72
Identity = 131/165 (79.39%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+ WELYCLEHGIQPDG MPSD +VG   DAFNTFFSETG+G+HVPRAVF+DLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF AV  X              VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNARWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGXTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA2_ELEIN1.821e-7380.00Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA_WHEAT2.378e-7378.18Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]
TBA2_MAIZE5.298e-7378.18Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA1_NAEGR5.298e-7376.36Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA1_MAIZE5.298e-7378.18Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA1_ELEIN5.298e-7378.18Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA_TETTH9.037e-7376.97Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_TETPY9.037e-7376.97Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBA_EUGGR1.180e-7276.36Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA1_ANEPH1.542e-7279.39Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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