FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14214 contig Ccv1_Contig14214:11..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.629e-72
Identity = 126/165 (76.36%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPR +F+DLEP+V+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDL LDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.629e-72
Identity = 126/165 (76.36%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPR +F+DLEP+V+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDL LDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.629e-72
Identity = 126/165 (76.36%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPR +F+DLEP+V+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDL LDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.629e-72
Identity = 125/165 (75.76%), Postives = 142/165 (86.06%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG+QVGN+CWELYCLEHGIQPDG MPS  ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVFS+V                 VDYGKKSKLGFT+Y
Sbjct:    8 HIGQAGVQVGNACWELYCLEHGIQPDGLMPSSKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.305e-71
Identity = 124/165 (75.15%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG QVGN+CWEL+CLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+V+DEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLV+ AV                 VDYGKKSKLG+T+Y
Sbjct:    8 HIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.704e-71
Identity = 123/165 (74.55%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG QVGN+CWEL+CLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPRAVF+DLEP+V+DE+RTG+YRQLFHPEQLISGKEDAANN+ARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLV+ AV                 VDYGKKSKLG+T+Y
Sbjct:    8 HIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.226e-71
Identity = 125/165 (75.76%), Postives = 141/165 (85.45%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQVGN+CWELYCLEHGIQPDG +P D + G   DAF+TFFS+TG+G+HVPRA+FVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 V+YGKKSKLGFT+Y
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQVPGDKTAGHHDDAFSTFFSQTGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVEYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.797e-71
Identity = 124/165 (75.15%), Postives = 140/165 (84.85%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAGIQVGN+CWEL+CLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPR VF+DLEP+V DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLAD CTGLQGFLVF++V                 VDYGKKSKLGFT+Y
Sbjct:    8 HVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVDDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 6.477e-71
Identity = 123/165 (74.55%), Postives = 140/165 (84.85%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAGIQ+GN+CWEL+CLEHGIQPDG MPSD ++G   DAFNTFFSETG+ +HVPR VF+DLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLAD CTGLQGFLVF++V                 VDYGKKSKLGFT+Y
Sbjct:    8 HVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.461e-70
Identity = 126/165 (76.36%), Postives = 138/165 (83.64%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG QVGN+CWELYCLEHGIQPDG MPSD SVG   DAFNTFFSETG+G+HVPRAVF+DLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDLCLDRVRKLAD CTGLQGFLVF +V                 VDYGKKSKL F +Y
Sbjct:    8 HIGQAGTQVGNACWELYCLEHGIQPDGQMPSDKSVGYGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRVRKLADQCTGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVY 172
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA2_CHLRE2.629e-7276.36Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBA1_VOLCA2.629e-7276.36Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN... [more]
TBA1_CHLRE2.629e-7276.36Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA13_NAEGR2.629e-7275.76Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA_TRYBR1.305e-7175.15Tubulin alpha chain OS=Trypanosoma brucei rhodesie... [more]
TBA_TRYCR1.704e-7174.55Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA3_MAIZE2.226e-7175.76Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA_OXYGR3.797e-7175.15Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA1_STYLE6.477e-7174.55Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBAD_PHYPO2.461e-7076.36Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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