FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_TRIVE (Tubulin beta-2 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+  +G     + +    +  N +F+E  + ++VPRAV VDLEP  +D VR G + QLF P+  I G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDSNGIYGGSSELQL--ERMNVYFNEANNNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFIFGQSSAGNNWAKGHYTEGAELVDNVLDVIRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G QVG++ W+    EHG+   G    D+ +    +  N +F+E G  ++VPRAV +DLEP  +D +R+G    L+ P+  I G+  A NN+A+GHYT G E+VD  +D VR+ A++C  LQGF V
Sbjct:   10 GQCGNQVGSAFWQTISGEHGLDASGIYTGDSDLQL--ERMNVYFNEAGGNKYVPRAVLIDLEPGTMDALRSGPNGALYRPDNFIYGQSSAGNNWAKGHYTEGAELVDQVIDVVRREAESCDCLQGFQV 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_DROER (Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.197e-24
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G   WE+   EH I   GT   D+ +    +  N +++E    ++VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD VRK ++ C  LQGF
Sbjct:   10 GQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQL--ERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGRFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESEGCDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_ASPFU (Tubulin beta chain OS=Aspergillus fumigatus GN=AFUA_7G00250 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.563e-24
Identity = 53/128 (41.41%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G QVG + W+    EHG+   G   + +      +  N +F+E G+ ++VPRAV VDLEP  +D +R+G +  LF P+  + G+  A NN+A+GHYT G E+VD  +D VR+ A++C  LQGF +
Sbjct:   10 GQCGNQVGAAFWQTISSEHGLDESGLCNASSDQQL--ERMNVYFNEVGNSKYVPRAVLVDLEPGTMDAIRSGPHGALFRPDNFVFGQSSAGNNWAKGHYTEGAELVDQVIDVVRREAESCDYLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_NEUCR (Tubulin beta chain OS=Neurospora crassa GN=tub-2 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.042e-24
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDASGVYNGTSELQL--ERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_USTMA (Tubulin beta chain OS=Ustilago maydis GN=UM05828 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 57/131 (43.51%), Postives = 76/131 (58.02%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAF---NTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G QVG   WE+   EHGI  +G       +G   D     N +++E    ++VPRAV VDLEP  +D  R+G    LF P+  + G+  A NN+A+GHYT G E+VD  LD +RK A+NC  LQGF +
Sbjct:   10 GQCGNQVGTKFWEVLSDEHGIDHNGNY-----IGTSDDQLARINVYYNEASGNKYVPRAVLVDLEPGTMDSTRSGPLGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAENCDMLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_TRIRU (Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDG--TMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G  T  SD  +    +  N +F+E  S ++VPRAV VDLEP+ +D VR G + QLF P+ ++ G+  A NN+A+GHYT G  +VD  +D VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTIAGEHGLDGSGHYTGSSDLQL----ERMNVYFNEASSKKYVPRAVLVDLEPAALDAVRAGPFGQLFRPDNVVFGQSGAGNNWAKGHYTEGANLVDQVIDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_SCHPO (Tubulin beta chain OS=Schizosaccharomyces pombe GN=nda3 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 55/126 (43.65%), Postives = 75/126 (59.52%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G QVG + W     EHG+   G     +   A H+  N +F+E   G++VPRAV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D  LD VR+ A+ C  LQGF
Sbjct:   10 GQCGNQVGAAFWSTIADEHGLDSAGIYHGTSE--AQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_RHYSE (Tubulin beta chain OS=Rhynchosporium secalis PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQL--ERLNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_MYCPJ (Tubulin beta chain OS=Mycosphaerella pini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQL--ERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB2_TRIVE1.197e-2442.19Tubulin beta-2 chain OS=Trichoderma virens PE=2 SV... [more]
TBB2_EMENI1.197e-2442.19Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB2_DROER1.197e-2442.86Tubulin beta-2 chain OS=Drosophila erecta GN=betaT... [more]
TBB_ASPFU1.563e-2441.41Tubulin beta chain OS=Aspergillus fumigatus GN=AFU... [more]
TBB_NEUCR2.042e-2442.19Tubulin beta chain OS=Neurospora crassa GN=tub-2 P... [more]
TBB_USTMA2.666e-2443.51Tubulin beta chain OS=Ustilago maydis GN=UM05828 P... [more]
TBB_TRIRU2.666e-2443.08Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=... [more]
TBB_SCHPO2.666e-2443.65Tubulin beta chain OS=Schizosaccharomyces pombe GN... [more]
TBB_RHYSE2.666e-2442.19Tubulin beta chain OS=Rhynchosporium secalis PE=3 ... [more]
TBB_MYCPJ2.666e-2442.19Tubulin beta chain OS=Mycosphaerella pini GN=TUB1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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