FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_MYCGR (Tubulin beta chain OS=Mycosphaerella graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQL--ERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQL--ERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQL--ERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G   WE+   EHGI   G     + +    D    +++E   G++VPRAV VDLEP V+D ++ G +  L+ P+  ++G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF V
Sbjct:   10 GQCGNQIGAKFWEVISEEHGIDSSGAYNGTSDLQL--DRAEVYYNEGSGGRYVPRAVLVDLEPGVLDTIKAGPHGGLYRPDNFVAGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEGCDCLQGFQV 135
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G   WE+   EHGI+ DG       +    +  + +++E GS ++VPRAV VDLEP  +D VR+G    LF P+  I G+  A NN+A+GHYT G E+VD  LD VRK A+    LQGF +
Sbjct:   10 GQCGNQIGAKFWEVVSDEHGIERDGLYKGTNDMQL--ERISVYYNEIGSNKYVPRAVLVDLEPGTMDSVRSGPLGGLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGTDCLQGFQI 135
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_YEAST (Tubulin beta chain OS=Saccharomyces cerevisiae GN=TUB2 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + WE  C EHG+  +GT      +    +  N +F+E  SG+ VPR++ VDLEP  ID VR  +   LF P+  I G+  A N +A+GHYT G E+VD  +D +R+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQK--ERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQI 135
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQL--ERTNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_PORYE (Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G   WE+   EHGI   G     + +    D    +++E   G++VPRAV VDLEP V+D ++ G +  L+ P+  ++G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF V
Sbjct:   10 GQCGNQIGAKFWEVISEEHGIDSSGAYIGTSDLQL--DRAEVYYNEGSGGRYVPRAVLVDLEPGVLDTIKAGPHGGLYRPDNFVAGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEGCDCLQGFQV 135
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ   Q+G   WE+   EHGI+PDG    +  +    +  + +++E G+ ++VPRAV VDLEP  +D VR+G    LF P+  + G+    NN+A+GHYT G E+VD  LD VRK A+    LQGF +
Sbjct:   10 GQCRNQIGAKFWEVVSDEHGIEPDGLYKGNNDLQL--ERISVYYNEVGANKYVPRAVLVDLEPGTMDSVRSGPLGSLFRPDNFVFGQSGGGNNWAKGHYTEGAELVDAVLDVVRKEAEGTDCLQGFQI 135
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E  + + VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQL--ERMNVYFNEASNNKFVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB_MYCGR2.666e-2442.19Tubulin beta chain OS=Mycosphaerella graminicola G... [more]
TBB_ERYGR2.666e-2442.19Tubulin beta chain OS=Erysiphe graminis subsp. hor... [more]
TBB_BOTFU2.666e-2442.19Tubulin beta chain OS=Botryotinia fuckeliana GN=tu... [more]
TBB_PORPU3.482e-2442.19Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]
TBB1_SUIBO3.482e-2444.53Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB_YEAST4.548e-2442.19Tubulin beta chain OS=Saccharomyces cerevisiae GN=... [more]
TBB_UNCNE4.548e-2442.19Tubulin beta chain OS=Uncinula necator PE=3 SV=1[more]
TBB_PORYE4.548e-2442.19Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 ... [more]
TBB_PLESA4.548e-2442.19Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]
TBB_COCHE4.548e-2442.19Tubulin beta chain OS=Cochliobolus heterostrophus ... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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