FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_CEPAC (Tubulin beta chain OS=Cephalosporium acremonium GN=TUB2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.940e-24
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+  +G     + +    +  + +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDSNGVYNGSSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.940e-24
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+  +G     + +    +  + +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB8_PAPHA (Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.940e-24
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G   WE+   EH I   GT   D+ +    +  + +++E   G++VPRAV VDLEP  +D VR+G + Q+F P+  I G+  A NN+A+GHYT G E+++  +D VRK A++C  LQGF
Sbjct:   10 GQCGNQIGAKFWEVISDEHAIDSAGTYHGDSRLQL--ERIDVYYNEACGGRYVPRAVLVDLEPGTLDSVRSGPFGQIFRPDSFIFGQCGAGNNWAKGHYTEGAELMESVMDVVRKEAESCDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_PENDI (Tubulin beta chain OS=Penicillium digitatum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.758e-24
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+  DG     + +    +  N +F+     ++VPRAV VDLEP  +D VR+G + +LF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGDGQYNGTSDLQL--ERMNVYFNHASGDKYVPRAVLVDLEPGTMDAVRSGPFGKLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.758e-24
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+  +G     + +    +  + +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_GIBFU (Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.758e-24
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+  +G     + +    +  + +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQL--ERMSVYFNERSGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_CERBT (Tubulin beta chain OS=Cercospora beticola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.758e-24
Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E    ++VPRAV VDLEP  +D VR G   QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQL--ERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPXGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+  +G     + +    +  + +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEACDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_DICDI (Tubulin beta chain OS=Dictyostelium discoideum GN=tubB PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACH---DAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            GQ G Q+G+  WE+   EHGIQ DG               +  N +++E   G++VPR+V VDLEP  +D ++   Y +LF P+  I G+  A NN+A+GHYT G E+V+  LD VR+  + C  LQGF V  ++
Sbjct:   10 GQCGNQIGSKFWEVISEEHGIQSDGFHAGGEDEHLKRLQLERINVYYNEARDGKYVPRSVLVDLEPGTVDTIKASPYGKLFRPDNFIHGQSGAGNNWAKGHYTEGVELVESVLDVVRRETEGCDCLQGFQVTHSI 144          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G+  WE    EHGI   G+   D+ +    +  N +++E   G++VPRA+ +DLEP  +D VR+G   +LF P+  I G+  A NN+A+GHYT G E+++  LD VRK  + C  LQGF
Sbjct:   10 GQCGNQIGSKFWETISQEHGIDEMGSYHGDSDLQL--ERINVYYNEGQGGKYVPRALLIDLEPGTMDSVRSGPLGKLFRPDNFIFGQSGAGNNWAKGHYTEGAELIEEVLDVVRKECEACDCLQGF 133          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB_CEPAC5.940e-2441.41Tubulin beta chain OS=Cephalosporium acremonium GN... [more]
TBB_ACRCO5.940e-2441.41Tubulin beta chain OS=Acremonium coenophialum GN=T... [more]
TBB8_PAPHA5.940e-2442.86Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 P... [more]
TBB_PENDI7.758e-2441.41Tubulin beta chain OS=Penicillium digitatum GN=TUB... [more]
TBB_METAN7.758e-2441.41Tubulin beta chain OS=Metarhizium anisopliae PE=3 ... [more]
TBB_GIBFU7.758e-2441.41Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2... [more]
TBB_CERBT7.758e-2442.19Tubulin beta chain OS=Cercospora beticola GN=TUB1 ... [more]
TBB_PESMI1.013e-2341.41Tubulin beta chain OS=Pestalotiopsis microspora GN... [more]
TBB_DICDI1.013e-2340.00Tubulin beta chain OS=Dictyostelium discoideum GN=... [more]
TBB3_ECHMU1.013e-2342.06Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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