FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+  +G     + +    +  + +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQNISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+  +G     + +    +  + +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQNISGEHGLDSNGVYNGTSELQL--ERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            +GQ G QVG   WE    EHGI  DG    D      H     +++E+ SG +VPRA  +DLEP V+  ++     QLFHP+    G+  A NN+A+GHYT G E+V+  LD +R+ A+ C  LQGF V
Sbjct:   10 VGQCGNQVGLKFWEGISAEHGIDVDGKYIGDRPDQELH-RIGVYYNESSSGSYVPRAAMLDLEPGVLMAIKNSKRGQLFHPDNFAYGQSGAGNNWAKGHYTEGAELVETALDIIRREAETCDVLQGFQV 137          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_USTVI (Tubulin beta chain OS=Ustilago violacea PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.728e-23
Identity = 57/128 (44.53%), Postives = 78/128 (60.94%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDG--TMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G   WE+   EHGI   G  T  SD  +    +  N +++ETG+G++VPRAV VDL+P  +D ++ G    LF P+  + G+  A NN+A+GHYT G E+VD  LD VRK A+    LQGF
Sbjct:   10 GQCGNQIGTKFWEVVSEEHGIDGTGQYTGTSDLQL----ERINVYYNETGTGKYVPRAVLVDLKPGTMDVIQGGPLGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRKEAEGTDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_SCHCO (Tubulin beta chain OS=Schizophyllum commune GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.728e-23
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G   WE+   EHGI+ DG            +  + +++E G+ ++VPRA+ VDLEP  +D VR+G    LF P+  + G+  A NN+A+GHYT G E+VD  LD VRK A+    LQGF +
Sbjct:   10 GQCGNQIGAKFWEVVSDEHGIEADGLYKGTNDQQL--ERISVYYNEIGANKYVPRAILVDLEPGTMDSVRSGPLGGLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAEGTDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_EMENI (Tubulin beta-1 chain OS=Emericella nidulans GN=benA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.728e-23
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G + W+    EHG+   G     + +    +  N +F+E    ++VPRAV VDLEP  +D VR G + +LF P+  + G+  A NN+A+GHYT G E+VD  +D VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQL--ERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVVDVVRREAEGCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_COLGL (Tubulin beta-1 chain OS=Colletotrichum gloeosporioides GN=TUB1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.728e-23
Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  182 GIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            G QVG + W+    EHG+  DG    +++  +  D  + +F+E  + ++VPRAV VDLEP+ +D +R+G     F P+ ++ G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   16 GNQVGTAFWQTIHHEHGLDHDGYFRGESTQQS--DRLSVYFAEASNNKYVPRAVLVDLEPATMDAIRSGPLGNFFRPDNMVHGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAETCDSLQGFQI 138          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.948e-23
Identity = 53/128 (41.41%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G+  WE+   E G+ P   +P D+ +    +  N +++E   G++VP A+ +DLEP  +D VR G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A++C  LQGF +
Sbjct:   10 GQCGNQIGSKFWEVISDEQGVDPPD-IPGDSDLQL--ERINVYYNEATGGRYVP-AILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGPELIDSVLDVVRKEAESCDCLQGFQI 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.948e-23
Identity = 50/131 (38.17%), Postives = 78/131 (59.54%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTM--PSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            +GQ G Q+G   WE+   EHG+  +GT     D  +    +  + +++E    + VPRAV VDLEP  +D VR  +Y +LF P+  + G+  A NN+A+GHYT G E+++  +D +RK ++ C  LQGF +
Sbjct:    9 VGQCGNQIGAKFWEVISHEHGVDTNGTYFGNKDNQI----EKIDVYYNEVSGNRFVPRAVLVDLEPGTMDSVRASNYGRLFRPDNFVFGQSGAGNNWAKGHYTEGAELIESAMDIIRKESEQCECLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.948e-23
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G QVG + W+    EHG+  DG         +  +  + +F+E    ++VPRAV VDLEP+ +D +R+G     F P+ ++ G+  A NN+A+GHYT G E+VD  LD VR+ A+ C  LQGF +
Sbjct:   10 GQCGNQVGTAFWQTIHGEHGLDQDGVFRGSDEQQS--ERLSVYFTEAAKQKYVPRAVLVDLEPATMDAIRSGPLGDFFRPDNMVYGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEACDSLQGFQI 135          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB2_COLGR1.013e-2341.41Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBB2_COLGL1.013e-2341.41Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB1_CHOCR1.013e-2342.64Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBB_USTVI1.728e-2344.53Tubulin beta chain OS=Ustilago violacea PE=2 SV=1[more]
TBB_SCHCO1.728e-2342.19Tubulin beta chain OS=Schizophyllum commune GN=TUB... [more]
TBB1_EMENI1.728e-2340.63Tubulin beta-1 chain OS=Emericella nidulans GN=ben... [more]
TBB1_COLGL1.728e-2340.80Tubulin beta-1 chain OS=Colletotrichum gloeosporio... [more]
TBB_EUGGR2.948e-2341.41Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]
TBBN_GUITH2.948e-2338.17Tubulin beta chain, nucleomorph OS=Guillardia thet... [more]
TBB1_COLGR2.948e-2340.63Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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