FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.850e-23
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 2
Query:  224 EHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            EHG+ P GT   D+ +    +  N +++E   G++VPRA+ +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E++D  LD VRK A++C  LQGF +
Sbjct:    2 EHGVDPTGTYHGDSDLQL--ERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQI 110          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTM--PSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G QVG   WE    EHGI   G     SD  +    +  N +++E  S ++VPRAV +DLEP  +D VR G + +LF P+  + G+  A NN+A+GHYT G E++D  +D VRK A++   LQGF +
Sbjct:   10 GQCGNQVGCKFWETISGEHGIDQSGRYVGTSDNQL----ERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTM--PSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G QVG   WE    EHGI   G     SD  +    +  N +++E  S ++VPRAV +DLEP  +D VR G + +LF P+  + G+  A NN+A+GHYT G E++D  +D VRK A++   LQGF +
Sbjct:   10 GQCGNQVGCKFWETISGEHGIDQTGRYVGTSDNQL----ERINVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22
Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            GQ G Q+G + W+    EHG+  DG    + S+    +  N +F+E    ++VPRAV VDLEP  +D VR G + QLF P+  +  +  A N +A+GHYT G E+VD  +D VR+ A+ C  LQGF +  ++
Sbjct:   10 GQCGNQIGAAFWQTISGEHGV--DGAGYYNGSLDIQLERMNVYFNEAAEKKYVPRAVLVDLEPGTMDSVRAGPFGQLFRPDNFVFVQSGAGNTWAKGHYTEGSELVDQVIDVVRREAERCDCLQGFQIIHSL 139          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB8B_HUMAN (Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G   WE+   EH I   GT   D+ +    +  N    E   G++VPRAV VDLEP  +D V +G + Q+F P+  ISG+  A NN+A+G YT G E+ +  +D VRK A++C  LQGF
Sbjct:   10 GQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVHHHEASGGRYVPRAVLVDLEPGTMDSVHSGPFGQVFRPDNFISGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_ENCHE (Tubulin beta chain OS=Encephalitozoon hellem GN=TUB2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTM--PSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G QVG   WE    EHGI   G     SD  +    +  N +++E  S ++VPRAV +DLEP  +D VR G +  LF P+  + G+  A NN+A+GHYT G E++D  +D VRK A++   LQGF +
Sbjct:   10 GQCGNQVGCKFWETISGEHGIDQTGKYVGTSDNQL----ERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGDLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.257e-22
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G   WE+   EH I   GT   D+ +    +  N    E   G++VPRAV VDLEP  +D VR+G + ++F P+  IS +  A NN+A+G YT G E+++  +D VRK A++C  LQGF
Sbjct:   10 GQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVHHHEASGGRYVPRAVLVDLEPGTMDSVRSGPFAEVFRPDNFISRQCGAGNNWAKGRYTEGAELMESVMDVVRKEAESCDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB6_CHICK (Tubulin beta-6 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            IGQ G Q+G   WE+   EHGI   G    + S+    +  N +F+E  S ++VPR++ VDLEP  +D VR+     LF P+  I G   A NN+A+GHYT G E+++  +D VR   ++C  LQGF
Sbjct:    9 IGQCGNQIGAKFWEVISDEHGIDIAGNYCGNASLQL--ERINVYFNEAYSHKYVPRSILVDLEPGTMDSVRSSKIGPLFRPDNFIHGNSGAGNNWAKGHYTEGAELIENVMDVVRNECESCDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_GEOCN (Tubulin beta-2 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 53/127 (41.73%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  173 GQAGI-QVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQAG+ QV  + W     EHG+  DG +  D S     D  + FF+E  + ++VPRAV VDLEP+ +D +R+G    ++ P+ LISG+  A NN+A+G YT G E++D  +D +R+ A+    LQGF
Sbjct:   10 GQAGMNQVSTAFWSTITDEHGLDADGHLRPDAS-SLESDRLDVFFNEASNKKYVPRAVAVDLEPATLDAIRSGPLGHIYRPDNLISGESGAGNNWAKGFYTEGAELMDSVMDIIRREAEQSESLQGF 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_ANEPH (Tubulin beta-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.604e-21
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  293 NTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            N +++E   G++VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V
Sbjct:   16 NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQV 103          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB2_OOMCK3.850e-2344.14Tubulin beta-2 chain (Fragment) OS=Oomycete-like s... [more]
TBB_ENCIN8.577e-2342.31Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB_ENCCU8.577e-2342.31Tubulin beta chain OS=Encephalitozoon cuniculi GN=... [more]
TBB_AJECA1.463e-2240.15Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]
TBB8B_HUMAN1.463e-2242.86Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1[more]
TBB_ENCHE1.911e-2242.31Tubulin beta chain OS=Encephalitozoon hellem GN=TU... [more]
TBB4Q_HUMAN4.257e-2242.06Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB6_CHICK5.560e-2240.94Tubulin beta-6 chain OS=Gallus gallus PE=1 SV=1[more]
TBB2_GEOCN5.560e-2241.73Tubulin beta-2 chain OS=Geotrichum candidum PE=3 S... [more]
TBB2_ANEPH3.604e-2151.14Tubulin beta-2 chain (Fragment) OS=Anemia phylliti... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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