FC920904
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.850e-23 Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 2 Query: 224 EHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556 EHG+ P GT D+ + + N +++E G++VPRA+ +DLEP +D VR G + QLF P+ + G+ A NN+A+GHYT G E++D LD VRK A++C LQGF + Sbjct: 2 EHGVDPTGTYHGDSDLQL--ERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQI 110
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23 Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTM--PSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556 GQ G QVG WE EHGI G SD + + N +++E S ++VPRAV +DLEP +D VR G + +LF P+ + G+ A NN+A+GHYT G E++D +D VRK A++ LQGF + Sbjct: 10 GQCGNQVGCKFWETISGEHGIDQSGRYVGTSDNQL----ERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQI 135
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23 Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTM--PSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556 GQ G QVG WE EHGI G SD + + N +++E S ++VPRAV +DLEP +D VR G + +LF P+ + G+ A NN+A+GHYT G E++D +D VRK A++ LQGF + Sbjct: 10 GQCGNQVGCKFWETISGEHGIDQTGRYVGTSDNQL----ERINVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQI 135
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22 Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 GQ G Q+G + W+ EHG+ DG + S+ + N +F+E ++VPRAV VDLEP +D VR G + QLF P+ + + A N +A+GHYT G E+VD +D VR+ A+ C LQGF + ++ Sbjct: 10 GQCGNQIGAAFWQTISGEHGV--DGAGYYNGSLDIQLERMNVYFNEAAEKKYVPRAVLVDLEPGTMDSVRAGPFGQLFRPDNFVFVQSGAGNTWAKGHYTEGSELVDQVIDVVRREAERCDCLQGFQIIHSL 139
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB8B_HUMAN (Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22 Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550 GQ G Q+G WE+ EH I GT D+ + + N E G++VPRAV VDLEP +D V +G + Q+F P+ ISG+ A NN+A+G YT G E+ + +D VRK A++C LQGF Sbjct: 10 GQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVHHHEASGGRYVPRAVLVDLEPGTMDSVHSGPFGQVFRPDNFISGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGF 133
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_ENCHE (Tubulin beta chain OS=Encephalitozoon hellem GN=TUB2 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22 Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTM--PSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556 GQ G QVG WE EHGI G SD + + N +++E S ++VPRAV +DLEP +D VR G + LF P+ + G+ A NN+A+GHYT G E++D +D VRK A++ LQGF + Sbjct: 10 GQCGNQVGCKFWETISGEHGIDQTGKYVGTSDNQL----ERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGDLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQI 135
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.257e-22 Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550 GQ G Q+G WE+ EH I GT D+ + + N E G++VPRAV VDLEP +D VR+G + ++F P+ IS + A NN+A+G YT G E+++ +D VRK A++C LQGF Sbjct: 10 GQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVHHHEASGGRYVPRAVLVDLEPGTMDSVRSGPFAEVFRPDNFISRQCGAGNNWAKGRYTEGAELMESVMDVVRKEAESCDCLQGF 133
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB6_CHICK (Tubulin beta-6 chain OS=Gallus gallus PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22 Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550 IGQ G Q+G WE+ EHGI G + S+ + N +F+E S ++VPR++ VDLEP +D VR+ LF P+ I G A NN+A+GHYT G E+++ +D VR ++C LQGF Sbjct: 9 IGQCGNQIGAKFWEVISDEHGIDIAGNYCGNASLQL--ERINVYFNEAYSHKYVPRSILVDLEPGTMDSVRSSKIGPLFRPDNFIHGNSGAGNNWAKGHYTEGAELIENVMDVVRNECESCDCLQGF 133
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_GEOCN (Tubulin beta-2 chain OS=Geotrichum candidum PE=3 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22 Identity = 53/127 (41.73%), Postives = 78/127 (61.42%), Query Frame = 2 Query: 173 GQAGI-QVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550 GQAG+ QV + W EHG+ DG + D S D + FF+E + ++VPRAV VDLEP+ +D +R+G ++ P+ LISG+ A NN+A+G YT G E++D +D +R+ A+ LQGF Sbjct: 10 GQAGMNQVSTAFWSTITDEHGLDADGHLRPDAS-SLESDRLDVFFNEASNKKYVPRAVAVDLEPATLDAIRSGPLGHIYRPDNLISGESGAGNNWAKGFYTEGAELMDSVMDIIRREAEQSESLQGF 135
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_ANEPH (Tubulin beta-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBB2 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.604e-21 Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 293 NTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556 N +++E G++VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V Sbjct: 16 NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQV 103 The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bpback to top |