FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_HUMAN (Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 51/130 (39.23%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACH-DAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            IGQ G Q+G   WE+   EHGI   G   SD    A   +  + +++E    ++VPRAV VDLEP  +D +R+     LF P+  + G   A NN+A+GHYT G E+++  L+ VR  +++C  LQGF +
Sbjct:    9 IGQCGNQIGAKFWEMIGEEHGIDLAG---SDRGASALQLERISVYYNEAYGRKYVPRAVLVDLEPGTMDSIRSSKLGALFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVLEVVRHESESCDCLQGFQI 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.204e-20
Identity = 51/129 (39.53%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            +GQ G QVG+  W   C EHGI  DG +    ++G   D  + FF +    Q++PRA+ +DLEP VI+ ++T   R LF+PE +   KE   A NN+A G YT G  + +  LD + + A+ C  L+GF
Sbjct:   10 VGQCGNQVGSEFWRKLCQEHGIAKDGRLEDFATLGG--DRKDVFFYQADDEQYIPRAILLDLEPRVINGIQTSDLRNLFNPENIFISKEGGGAGNNWASG-YTQGEAVQETLLDMIDREAEYCDSLEGF 135          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19
Identity = 45/134 (33.58%), Postives = 78/134 (58.21%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            GQ G  +G+  W+  CLEHGI  DGT+    + G   D  + FF ++   +++PR++ +DLEP VI+ ++TG YR +++PE    GK    A NN+  G Y  G ++ +  ++ + + AD    L+GF++  ++
Sbjct:   11 GQCGNSIGSQFWQQLCLEHGISQDGTIEDFATEGG--DRKDVFFYQSDDTRYIPRSILIDLEPRVINTIQTGPYRNIYNPENFYVGKSGLGAGNNWGDG-YQTGEQVHEEIMEMIEREADGSDSLEGFMMLHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.514e-19
Identity = 47/134 (35.07%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            GQ G Q+G+  W+  CLEHGI PDGT+ S  + G   D  + FF ++   +++PRA+ +DLEP V++ + + +Y  L++PE ++  K    A NN+A G Y+    I +  +D + + AD    L+GF +  ++
Sbjct:   11 GQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGV--DRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 2
Query:  422 ISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDY-GKKSKLGFTIY 661
            + GKEDAANN+ARGHYTVG+E++++C DR+RKLAD C GLQGFLVF +V                 ++Y GKKSKL F +Y
Sbjct:    1 LRGKEDAANNYARGHYTVGKELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGSGFGSLLLQRLALEYGGKKSKLDFCVY 81          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.308e-18
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C+EHGI P+G +  D +V    D  + FF +     +VPRAV +DLEP VI+ ++  +Y  L++PE +   K    A NN+ RG YT   ++ D  L+ + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.308e-18
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C+EHGI P+G +  D +V    D  + FF +     +VPRAV +DLEP VI+ ++  +Y  L++PE +   K    A NN+ RG YT   ++ D  L+ + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C+EHGI P+G +  D +V    D  + FF +     +VPRAV +DLEP VI+ ++  +Y  L++PE +   K    A NN+ RG YT   ++ D  L+ + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINCIQKSTYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.851e-17
Identity = 43/134 (32.09%), Postives = 75/134 (55.97%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            GQ G  VG+  W+  CLEHGI  DG +    + G   D  + FF ++   +++PRA+ +DLEP V++ +++G Y+ +++PE    G++   A NN+  G Y  G  + +   D + + AD    L+GF+   ++
Sbjct:   11 GQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGG--DRKDVFFYQSDDTRYIPRAILLDLEPRVLNGIQSGPYKNIYNPENFFIGQQGIGAGNNWGAG-YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.417e-17
Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +     ++PRA+ VDLEP VI+ ++   YR L++ E +   +    A NN+A G Y  G ++VD  +D + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMIDREADGSDSLEGFVLCHSI 141          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB1_HUMAN1.048e-2039.23Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1... [more]
TBG_CHLRE5.204e-2039.53Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG_NEUCR2.583e-1933.58Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG_SCHPO7.514e-1935.07Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBA_DICPU1.674e-1854.32Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBG2_EUPOC8.308e-1835.56Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG1_EUPOC8.308e-1835.56Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG_EUPAE1.417e-1735.56Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG_EMENI1.851e-1732.09Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG2_ORYSJ2.417e-1734.81Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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