FC920904
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_HUMAN (Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20 Identity = 51/130 (39.23%), Postives = 75/130 (57.69%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACH-DAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556 IGQ G Q+G WE+ EHGI G SD A + + +++E ++VPRAV VDLEP +D +R+ LF P+ + G A NN+A+GHYT G E+++ L+ VR +++C LQGF + Sbjct: 9 IGQCGNQIGAKFWEMIGEEHGIDLAG---SDRGASALQLERISVYYNEAYGRKYVPRAVLVDLEPGTMDSIRSSKLGALFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVLEVVRHESESCDCLQGFQI 135
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.204e-20 Identity = 51/129 (39.53%), Postives = 74/129 (57.36%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550 +GQ G QVG+ W C EHGI DG + ++G D + FF + Q++PRA+ +DLEP VI+ ++T R LF+PE + KE A NN+A G YT G + + LD + + A+ C L+GF Sbjct: 10 VGQCGNQVGSEFWRKLCQEHGIAKDGRLEDFATLGG--DRKDVFFYQADDEQYIPRAILLDLEPRVINGIQTSDLRNLFNPENIFISKEGGGAGNNWASG-YTQGEAVQETLLDMIDREAEYCDSLEGF 135
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19 Identity = 45/134 (33.58%), Postives = 78/134 (58.21%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 GQ G +G+ W+ CLEHGI DGT+ + G D + FF ++ +++PR++ +DLEP VI+ ++TG YR +++PE GK A NN+ G Y G ++ + ++ + + AD L+GF++ ++ Sbjct: 11 GQCGNSIGSQFWQQLCLEHGISQDGTIEDFATEGG--DRKDVFFYQSDDTRYIPRSILIDLEPRVINTIQTGPYRNIYNPENFYVGKSGLGAGNNWGDG-YQTGEQVHEEIMEMIEREADGSDSLEGFMMLHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.514e-19 Identity = 47/134 (35.07%), Postives = 79/134 (58.96%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 GQ G Q+G+ W+ CLEHGI PDGT+ S + G D + FF ++ +++PRA+ +DLEP V++ + + +Y L++PE ++ K A NN+A G Y+ I + +D + + AD L+GF + ++ Sbjct: 11 GQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGV--DRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18 Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 2 Query: 422 ISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDY-GKKSKLGFTIY 661 + GKEDAANN+ARGHYTVG+E++++C DR+RKLAD C GLQGFLVF +V ++Y GKKSKL F +Y Sbjct: 1 LRGKEDAANNYARGHYTVGKELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGSGFGSLLLQRLALEYGGKKSKLDFCVY 81
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.308e-18 Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ C+EHGI P+G + D +V D + FF + +VPRAV +DLEP VI+ ++ +Y L++PE + K A NN+ RG YT ++ D L+ + + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 8.308e-18 Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ C+EHGI P+G + D +V D + FF + +VPRAV +DLEP VI+ ++ +Y L++PE + K A NN+ RG YT ++ D L+ + + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17 Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ C+EHGI P+G + D +V D + FF + +VPRAV +DLEP VI+ ++ +Y L++PE + K A NN+ RG YT ++ D L+ + + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCMEHGINPEGIL-EDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINCIQKSTYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.851e-17 Identity = 43/134 (32.09%), Postives = 75/134 (55.97%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 GQ G VG+ W+ CLEHGI DG + + G D + FF ++ +++PRA+ +DLEP V++ +++G Y+ +++PE G++ A NN+ G Y G + + D + + AD L+GF+ ++ Sbjct: 11 GQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGG--DRKDVFFYQSDDTRYIPRAILLDLEPRVLNGIQSGPYKNIYNPENFFIGQQGIGAGNNWGAG-YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.417e-17 Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ CLEHGI DG + + G D + FF + ++PRA+ VDLEP VI+ ++ YR L++ E + + A NN+A G Y G ++VD +D + + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMIDREADGSDSLEGFVLCHSI 141 The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bpback to top |