FC920904
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.417e-17 Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMP-SDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550 GQAG QVG + W + EHG+ G +D A + T +G ++VPR+V VDLE V + +R+G QLF P+ + A NN+A+G+YT G E++D LD VR+ + LQGF Sbjct: 11 GQAGNQVGEAFWRMLLAEHGLDDAGMYKGNDPQQIARAGVYFTQVDSSGPTKYVPRSVQVDLESGVCNRLRSGPLGQLFRPDTYFTSDSGAGNNWAKGYYTEGAELIDGILDIVRRQCEATEALQGF 137
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 4.123e-17 Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ CLEHGI PDG + + G D + FF + ++PRAV +DLEP VI+ + T Y +L++ E + K A NN+A G ++ G ++ + D + + AD L+GF++ ++ Sbjct: 10 LGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDG--QDRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG-FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.385e-17 Identity = 45/134 (33.58%), Postives = 77/134 (57.46%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 GQ G QVG+ W+ CLEHGI PDGT+ + G D + FF ++ +++PRA+ +DLEP V++ + + +Y L++PE + + A NN+A G Y +I + +D + + A+ L+GF + ++ Sbjct: 11 GQCGNQVGSQFWQQLCLEHGICPDGTLEDFATEGL--DRKDVFFYQSDDTRYIPRAILLDLEPRVVNNILSDTYGSLYNPENIFVATDGGGAGNNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.385e-17 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGK--EDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ C+EHGI P+G + G D + FF + +VPRAV +DLEP VI +++ Y L++PE K + A NN+A+G Y G + + ++ + + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCMEHGISPEGILEEYALDG--EDRKDVFFYQADDEHYVPRAVLIDLEPGVIKQIQNSPYSNLYNPENFFVSKTMDGAGNNWAKG-YCEGAKYEEEIIEMIDREADGSDSLEGFVLTHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17 Identity = 42/134 (31.34%), Postives = 74/134 (55.22%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 GQAG Q+G+ W C EHGI +G + + D + FF + ++PRAV +DLEP V+D +++G Y+ L++PE + A NN+A+G Y G + + ++ + + A+ L+GF++ ++ Sbjct: 11 GQAGNQIGSEFWSQLCAEHGISKEGVLEDWAT--DMTDRKDVFFYQADDEHYIPRAVMIDLEPRVLDSIKSGPYKNLYNPENFFYDPQGGGAGNNWAKG-YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_AVESA (Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17 Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 338 AVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 AV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 1 AVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 108
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16 Identity = 46/135 (34.07%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ CLEHGI DG + + G D + FF + +PR++ +DLEP VI+ ++ YR L++ E + + A NN+A G Y G ++VD +D V + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMVDREADGSDSLEGFVLCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ CLEHGI DG + + G D + FF + ++PRA+ +DLEP VI+ ++ G YR L++ E + A NN+A G Y G+ + + +D + + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ CLEHGI DG + + G D + FF + ++PRA+ +DLEP VI+ ++ G YR L++ E + A NN+A G Y G+ + + +D + + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16 Identity = 44/135 (32.59%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ C EHGI +G + + G D + FF + ++PRA+ VDLEP VI+ + Y L++PE + K+ A NN+A+G Y+ G I + ++ + + A+ L+GF+V ++ Sbjct: 10 LGQCGNQMGAVYWQRLCAEHGISSEGILEEWATEGG--DRKDVFFYQADDEHYIPRAILVDLEPRVINNILASPYANLYNPENIFVSKDGGGAGNNWAQG-YSAGERIYEDIMEMIDREAEGSDSLEGFMVMHSI 141 The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bpback to top |