FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.417e-17
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMP-SDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQAG QVG + W +   EHG+   G    +D    A    + T    +G  ++VPR+V VDLE  V + +R+G   QLF P+   +    A NN+A+G+YT G E++D  LD VR+  +    LQGF
Sbjct:   11 GQAGNQVGEAFWRMLLAEHGLDDAGMYKGNDPQQIARAGVYFTQVDSSGPTKYVPRSVQVDLESGVCNRLRSGPLGQLFRPDTYFTSDSGAGNNWAKGYYTEGAELIDGILDIVRRQCEATEALQGF 137          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.123e-17
Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  CLEHGI PDG +    + G   D  + FF +     ++PRAV +DLEP VI+ + T  Y +L++ E +   K    A NN+A G ++ G ++ +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDG--QDRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG-FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.385e-17
Identity = 45/134 (33.58%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            GQ G QVG+  W+  CLEHGI PDGT+    + G   D  + FF ++   +++PRA+ +DLEP V++ + + +Y  L++PE +    +   A NN+A G Y    +I +  +D + + A+    L+GF +  ++
Sbjct:   11 GQCGNQVGSQFWQQLCLEHGICPDGTLEDFATEGL--DRKDVFFYQSDDTRYIPRAILLDLEPRVVNNILSDTYGSLYNPENIFVATDGGGAGNNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.385e-17
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGK--EDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C+EHGI P+G +      G   D  + FF +     +VPRAV +DLEP VI +++   Y  L++PE     K  + A NN+A+G Y  G +  +  ++ + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCMEHGISPEGILEEYALDG--EDRKDVFFYQADDEHYVPRAVLIDLEPGVIKQIQNSPYSNLYNPENFFVSKTMDGAGNNWAKG-YCEGAKYEEEIIEMIDREADGSDSLEGFVLTHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 42/134 (31.34%), Postives = 74/134 (55.22%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            GQAG Q+G+  W   C EHGI  +G +    +     D  + FF +     ++PRAV +DLEP V+D +++G Y+ L++PE      +   A NN+A+G Y  G  + +  ++ + + A+    L+GF++  ++
Sbjct:   11 GQAGNQIGSEFWSQLCAEHGISKEGVLEDWAT--DMTDRKDVFFYQADDEHYIPRAVMIDLEPRVLDSIKSGPYKNLYNPENFFYDPQGGGAGNNWAKG-YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_AVESA (Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  338 AVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            AV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:    1 AVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 108          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16
Identity = 46/135 (34.07%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G Y  G ++VD  +D V + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMVDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +     ++PRA+ +DLEP VI+ ++ G YR L++ E +        A NN+A G Y  G+ + +  +D + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +     ++PRA+ +DLEP VI+ ++ G YR L++ E +        A NN+A G Y  G+ + +  +D + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 44/135 (32.59%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI  +G +    + G   D  + FF +     ++PRA+ VDLEP VI+ +    Y  L++PE +   K+   A NN+A+G Y+ G  I +  ++ + + A+    L+GF+V  ++
Sbjct:   10 LGQCGNQMGAVYWQRLCAEHGISSEGILEEWATEGG--DRKDVFFYQADDEHYIPRAILVDLEPRVINNILASPYANLYNPENIFVSKDGGGAGNNWAQG-YSAGERIYEDIMEMIDREAEGSDSLEGFMVMHSI 141          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB2_SUIBO2.417e-1738.58Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBG2_DROME4.123e-1734.07Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG_SCHJP5.385e-1733.58Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG2_EUPCR5.385e-1733.33Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_USTVI7.033e-1731.34Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]
TBB1_AVESA7.033e-1739.81Tubulin beta-1 chain (Fragment) OS=Avena sativa GN... [more]
TBG2_MAIZE1.200e-1634.07Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG2_ARATH1.200e-1633.33Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG1_ARATH1.200e-1633.33Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG_COPC72.046e-1632.59Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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