FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C+EHGI P+G +      G   D  + FF +     +VPRAV +DLEP VI+ ++   Y  L++PE +   K    A NN+ RG Y    ++ +  ++ + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCMEHGINPEGILEEYAQNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSPYASLYNPENIFISKHGGGAGNNWGRG-YCDAEKVQEEIIEMIDREADGSDSLEGFVLTHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 46/135 (34.07%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  CLEHGI P G +    + G   D  + FF +     ++PRAV +DLEP VI+ +    Y +L++PE +   K    A NN+A G Y+ G ++ +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGL--DRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G Y  G + VD  +D V + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQFVDDIMDMVDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.490e-16
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  CLEHGI  DG +    + G   D  + FF +     ++PRA+ +DLEP VI+ ++   YR L++ E +        A NN+A G Y  G ++ +  +D + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDEHYIPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G+  W+  C EHGI   G +      G   D  + FF ++    +VPRA+ +DLEP VID ++T  Y  L++ E +   ++   A NN+A G Y  G    D   D + + AD    L+GFL+  ++
Sbjct:   10 VGQCGNQIGSEFWKQLCKEHGINAAGYLEEFAKPGI--DRKDVFFYQSDDDHYVPRALLLDLEPRVIDSIKTSEYSGLYNQENIFVAEKGTGAGNNWANG-YKQGESFYDDIFDMIDREADGSESLEGFLLTHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI P+G +    + G   D  + FF +     ++PRAV +DLEP VI  +   SY +L++PE +   +    A NN+ RG ++ G +I +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.776e-16
Identity = 43/131 (32.82%), Postives = 78/131 (59.54%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQ-LISGKEDAANNFARGHYTVGR--EIVDLCLDRVRKLADNCTGLQGF 550
            ++GQ G Q+G+  ++  C EHGI PDG++ ++  +    D  + FF +    ++VPR++ +DLEP V+D +RT  +R  ++PE  +I     A N++A G+YT  +  EI ++    + +  ++C  L+GF
Sbjct:    9 NVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFID---DRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGF 132          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI P+G +    + G   D  + FF +     ++PRAV +DLEP VI  +   SY +L++PE +   +    A NN+A G ++ G +I +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI P+G +    + G   D  + FF +     ++PRAV +DLEP VI  +   SY +L++PE +   +    A NN+A G ++ G +I +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQP-----DGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            IG AG  +G+S W +   EHG+        GT P         +  N FF+ T S +   R + +D E S I  +   S  QL+ PE  ++G E A NNFARG++T G  I+D  L+  R+  ++   LQGF +  ++
Sbjct:    9 IGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQL------ERINVFFNATASKRFYARTILIDTEASTIQRLNASS--QLYRPENFVAGSESAGNNFARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSI 138          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBG1_EUPCR2.046e-1632.59Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG1_DROME2.046e-1634.07Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG1_MAIZE2.672e-1634.07Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBG_PHYPA3.490e-1632.59Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBG_DICDI5.954e-1634.07Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBG2_MOUSE5.954e-1633.33Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=... [more]
TBG_ENTHI7.776e-1632.82Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG1_RAT1.016e-1533.33Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg... [more]
TBG1_MOUSE1.016e-1533.33Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]
TBBP_DROME1.326e-1534.06Probable tubulin beta chain CG32396 OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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