FC920904
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16 Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ C+EHGI P+G + G D + FF + +VPRAV +DLEP VI+ ++ Y L++PE + K A NN+ RG Y ++ + ++ + + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCMEHGINPEGILEEYAQNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSPYASLYNPENIFISKHGGGAGNNWGRG-YCDAEKVQEEIIEMIDREADGSDSLEGFVLTHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16 Identity = 46/135 (34.07%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ CLEHGI P G + + G D + FF + ++PRAV +DLEP VI+ + Y +L++PE + K A NN+A G Y+ G ++ + D + + AD L+GF++ ++ Sbjct: 10 LGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGL--DRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16 Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ CLEHGI DG + + G D + FF + +PR++ +DLEP VI+ ++ YR L++ E + + A NN+A G Y G + VD +D V + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGG--DRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQFVDDIMDMVDREADGSDSLEGFVLCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.490e-16 Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ CLEHGI DG + + G D + FF + ++PRA+ +DLEP VI+ ++ YR L++ E + A NN+A G Y G ++ + +D + + AD L+GF++ ++ Sbjct: 10 VGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDEHYIPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16 Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G+ W+ C EHGI G + G D + FF ++ +VPRA+ +DLEP VID ++T Y L++ E + ++ A NN+A G Y G D D + + AD L+GFL+ ++ Sbjct: 10 VGQCGNQIGSEFWKQLCKEHGINAAGYLEEFAKPGI--DRKDVFFYQSDDDHYVPRALLLDLEPRVIDSIKTSEYSGLYNQENIFVAEKGTGAGNNWANG-YKQGESFYDDIFDMIDREADGSESLEGFLLTHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ C EHGI P+G + + G D + FF + ++PRAV +DLEP VI + SY +L++PE + + A NN+ RG ++ G +I + D + + AD L+GF++ ++ Sbjct: 10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.776e-16 Identity = 43/131 (32.82%), Postives = 78/131 (59.54%), Query Frame = 2 Query: 167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQ-LISGKEDAANNFARGHYTVGR--EIVDLCLDRVRKLADNCTGLQGF 550 ++GQ G Q+G+ ++ C EHGI PDG++ ++ + D + FF + ++VPR++ +DLEP V+D +RT +R ++PE +I A N++A G+YT + EI ++ + + ++C L+GF Sbjct: 9 NVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFID---DRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGF 132
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ C EHGI P+G + + G D + FF + ++PRAV +DLEP VI + SY +L++PE + + A NN+A G ++ G +I + D + + AD L+GF++ ++ Sbjct: 10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 +GQ G Q+G W+ C EHGI P+G + + G D + FF + ++PRAV +DLEP VI + SY +L++PE + + A NN+A G ++ G +I + D + + AD L+GF++ ++ Sbjct: 10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15 Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 2 Query: 170 IGQAGIQVGNSCWELYCLEHGIQP-----DGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568 IG AG +G+S W + EHG+ GT P + N FF+ T S + R + +D E S I + S QL+ PE ++G E A NNFARG++T G I+D L+ R+ ++ LQGF + ++ Sbjct: 9 IGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQL------ERINVFFNATASKRFYARTILIDTEASTIQRLNASS--QLYRPENFVAGSESAGNNFARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSI 138 The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bpback to top |