FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 46/165 (27.88%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   W+  C EH I  +G + ++  +    D  + FF +      +P A+  DLEP VI+ ++T  YR L++PE +   KE   A NN+  G Y+ G ++ +  +D + +  DN   L+GF++  ++                  +Y KK    F+++
Sbjct:   11 GQCGNQIGVEFWKQLCNEHNIDQEGILKNNNFLN--EDRKDIFFYQADDEHFIPGALLFDLEPRVINSIQTSEYRNLYNPENMFISKEGGGAGNNWGCG-YSQGHKVEEEIIDMIDREVDNSDNLEGFILSHSIAGGTGSGMGSYLLELLNDNYSKKMIQTFSVF 172          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 43/135 (31.85%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  CLEHGI  +G +    + G   D  + FF +     ++PRA+ +DLEP VI+ ++   YR L++ E +        A NN+A G Y  G ++ +  +D + + AD    L+GF++  ++
Sbjct:   10 VGQCGNQIGMEFWKQLCLEHGISKEGMLEDFATQGG--DRKDVFFYQADDEHYIPRALLLDLEPRVINGIQNSEYRNLYNHENVFVADHGGGAGNNWASG-YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI P+G +    + G   D  + FF +     ++PRAV +DLEP VI  +    Y +L++PE +   +    A NN+A G ++ G +I +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG2_BOVIN (Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI P+G +    + G   D  + FF +     ++PRAV +DLEP VI  +    Y +L++PE +   +    A NN+A G ++ G +I +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_HUMAN (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI P+G +    + G   D  + FF +     ++PRAV +DLEP VI  +    Y +L++PE +   +    A NN+A G ++ G +I +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI P+G +    + G   D  + FF +     ++PRAV +DLEP VI  +    Y +L++PE +   +    A NN+A G ++ G +I +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_BOVIN (Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 44/135 (32.59%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI P+G +    + G   D  + FF +     ++PRAV +DLEP VI  +    Y +L++PE +   +    A NN+A G ++ G +I +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI P+G +    + G   D  + FF +     ++PRAV +DLEP VI  +    Y  L++PE +   +    A NN+A G ++ G +I +   D + + AD    L+GF++  ++
Sbjct:   10 LGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGT--DRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYANLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSI 141          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W     EHGI PDG +    + G   D  + FF +     ++PRA+ +DLEP VI+ ++   ++ L++PE +    +   A NN+A G YT   E  +  +D + +  DN   L+GF++  ++
Sbjct:   10 VGQCGNQIGTEFWGRLIAEHGIGPDGIVKEFATEGT--DRKDVFFYQADDQHYIPRALLIDLEPRVINSLQESEFKNLWNPENVYIDSQGGGAGNNWAVG-YTHATEKYEHIMDMIDR-EDNSDSLEGFVLTHSI 140          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 43/135 (31.85%), Postives = 67/135 (49.63%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G Q+G   W+  C EHGI   G +     +G   D  + FF +      VPRA+ VDLEP VI +  +      F  E +    E   A NN+  G Y VG+ + +  +D +++ A+ C  L+ FL+  ++
Sbjct:    9 VGQCGNQMGAEFWKTLCKEHGISMCGVLQDSRDLG---DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSI 134          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBG_PLAFO2.955e-1527.88Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_ANEPH2.955e-1531.85Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBG2_HUMAN3.859e-1532.59Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=... [more]
TBG2_BOVIN3.859e-1532.59Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 ... [more]
TBG1_HUMAN3.859e-1532.59Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=... [more]
TBG1_CANFA3.859e-1532.59Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBG1_BOVIN3.859e-1532.59Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 ... [more]
TBG1_XENLA5.040e-1532.59Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 P... [more]
TBG_RETFI2.766e-1331.85Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_ENCCU3.058e-1231.85Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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