FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14214 contig Ccv1_Contig14214:11..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA4_MAIZE (Tubulin alpha-4 chain (Fragments) OS=Zea mays GN=TUBA4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVG 274
            HIGQAGIQVGN+CWELYCLEHGIQ DG MP D ++G
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIG 43          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 42/136 (30.88%), Postives = 69/136 (50.74%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDG-TMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKE--DAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAV 568
            +GQ G  VG   W     EHGI  DG +  +D       D  N FF +  + ++VPRA+ +DLEP+ + +V++ S+  LF+P       E   A N+++ G Y  G +  D  +D + +  D+    +GF +  +V
Sbjct:   10 VGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSV 143          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  377 VRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD VRK A++C  LQGF
Sbjct:    2 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 59          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA4_MAIZE5.216e-1280.56Tubulin alpha-4 chain (Fragments) OS=Zea mays GN=T... [more]
TBG_CANGA9.836e-1130.88Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBB_HALDI9.836e-1151.72Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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