FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 9.678e-67
Identity = 116/165 (70.30%), Postives = 136/165 (82.42%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAA+N+ARGHYT+G+EIVDL LDR+RKLAD CTGLQGFL+F +                  VDY KKSKL F IY
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAASNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYSKKSKLEFAIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.264e-66
Identity = 116/165 (70.30%), Postives = 135/165 (81.82%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQP G MPSD +VG   D+FNTFFSETGSG+HVPRAVFVDLEP+V+DE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYT+G+E +DL LDRVRKL+D CTGLQGFL+F +                  VDYGKKSKL F+IY
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.264e-66
Identity = 116/165 (70.30%), Postives = 134/165 (81.21%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFF ETG+G+HVPRAVFVDLEP+VIDE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVD+ LDR+RKLADNC GLQGFL+F +                  VDYGKKSKL F IY
Sbjct:    8 HVGQAGAQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFCETGAGKHVPRAVFVDLEPTVIDEIRTGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADNCAGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.651e-66
Identity = 115/165 (69.70%), Postives = 134/165 (81.21%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD + G   D+FNTFFSETG+G+HVPRA+FVDLEP+VIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+D+ LDR RKLAD CTGLQGFL+F +                  VDYGKKSKL F +Y
Sbjct:    2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTCGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGIYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDIVLDRTRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVY 166
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.816e-66
Identity = 116/165 (70.30%), Postives = 135/165 (81.82%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+F TFFSETG+G+HVPRAVFVDLEP+VIDEVR G+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+D  LDR+RKLAD CTGLQGFLVF +                  VDYGKKSKL F+IY
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFSETGAGKHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.193e-66
Identity = 115/165 (69.70%), Postives = 134/165 (81.21%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+ WELYCLEHGIQPD  MPSD +VG   D+FNTFFSETG+G+HVPRAVFVDLEPSV+DEVR+G YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVD+ LDR+RKLAD CTGLQGFL+F +                  VDYGKKSKL F +Y
Sbjct:    8 HVGQAGVQMGNAVWELYCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.310e-65
Identity = 113/165 (68.48%), Postives = 133/165 (80.61%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+F TFF ETG+G+HVPRAVFVDLEP+VIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+D  LDR+RKL+D CTGLQGFLVF +                  VDYGKKSKL F+IY
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.310e-65
Identity = 113/165 (68.48%), Postives = 133/165 (80.61%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+F TFF ETG+G+HVPRAVFVDLEP+VIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+D  LDR+RKL+D CTGLQGFLVF +                  VDYGKKSKL F+IY
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.310e-65
Identity = 113/165 (68.48%), Postives = 133/165 (80.61%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+F TFF ETG+G+HVPRAVFVDLEP+VIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+D  LDR+RKL+D CTGLQGFLVF +                  VDYGKKSKL F+IY
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 172
[Close]
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.310e-65
Identity = 113/165 (68.48%), Postives = 133/165 (80.61%), Query Frame = 2 
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+F TFF ETG+G+HVPRAVFVDLEP+VIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+D  LDR+RKL+D CTGLQGFLVF +                  VDYGKKSKL F+IY
Sbjct:    8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY 172
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA3E_HUMAN9.678e-6770.30Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA_ENTDO1.264e-6670.30Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA3_HOMAM1.264e-6670.30Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]
TBA_ONCKE1.651e-6669.70Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA_XENTR2.816e-6670.30Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA1_HOMAM8.193e-6669.70Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA4A_RAT5.310e-6568.48Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE5.310e-6568.48Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA5.310e-6568.48Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN5.310e-6568.48Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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