FC920905

Overview
NameFC920905
Unique NameFC920905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14212 contig Ccv1_Contig14212:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 3.134e-84
Identity = 158/188 (84.04%), Postives = 170/188 (90.43%), Query Frame = 3
Query:  114 MAAKTEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            MA KT   AIGIDLGTTYSCVGV+Q+ +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NPQNTVFDAKRLIGR+F DP VQSDM+HWPF+VV+  GDKP + V YKGE + F PEEISSMVLTKMKEIAEAYLGH V NAV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYG
Sbjct:    1 MAKKT---AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVVN-DGDKPKVQVNYKGENRSFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYG 184          
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HSP70_TRYCR (Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.094e-84
Identity = 152/180 (84.44%), Postives = 167/180 (92.78%), Query Frame = 3
Query:  138 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            AIGIDLGTTYSCVGVWQN+RVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMNP+NTVFDAKRLIGR+FSDP VQSDM+HWPFKV++   DKP+I V ++GE K F+PEE+SSMVL+KMKEIAE+YLG  VK AVVTVPAYFNDSQRQATKDAG IAGL V+RIINEPTAAAIAYG
Sbjct:    6 AIGIDLGTTYSCVGVWQNERVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVITKGDDKPVIQVQFRGETKTFNPEEVSSMVLSKMKEIAESYLGKQVKKAVVTVPAYFNDSQRQATKDAGTIAGLEVLRIINEPTAAAIAYG 185          
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HS71B_BOVIN (Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.094e-84
Identity = 154/180 (85.56%), Postives = 167/180 (92.78%), Query Frame = 3
Query:  138 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            AIGIDLGTTYSCVGV+Q+ +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NPQNTVFDAKRLIGR+F DP VQSDM+HWPF+V++  GDKP + V+YKGE K F PEEISSMVLTKMKEIAEAYLGH V NAV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYG
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFRVIN-DGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYG 184          
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.094e-84
Identity = 154/180 (85.56%), Postives = 167/180 (92.78%), Query Frame = 3
Query:  138 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            AIGIDLGTTYSCVGV+Q+ +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NPQNTVFDAKRLIGR+F DP VQSDM+HWPF+V++  GDKP + V+YKGE K F PEEISSMVLTKMKEIAEAYLGH V NAV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYG
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFRVIN-DGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYG 184          
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HS71A_BOVIN (Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA1A PE=2 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 4.094e-84
Identity = 154/180 (85.56%), Postives = 167/180 (92.78%), Query Frame = 3
Query:  138 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            AIGIDLGTTYSCVGV+Q+ +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NPQNTVFDAKRLIGR+F DP VQSDM+HWPF+V++  GDKP + V+YKGE K F PEEISSMVLTKMKEIAEAYLGH V NAV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYG
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFRVIN-DGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYG 184          
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 6.983e-84
Identity = 153/180 (85.00%), Postives = 167/180 (92.78%), Query Frame = 3
Query:  138 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            AIGIDLGTTYSCVGV+Q+ +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NPQNTVFDAKRLIGR+F DP VQ+DM+HWPF+V++  GDKP + V+YKGE K F PEEISSMVLTKMKEIAEAYLGH V NAV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYG
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQADMKHWPFRVIN-DGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVSNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYG 184          
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HSP70_XENLA (Heat shock 70 kDa protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 9.120e-84
Identity = 153/184 (83.15%), Postives = 168/184 (91.30%), Query Frame = 3
Query:  126 TEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            T+G A+GIDLGTTYSCVGV+Q+ +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGR+F+DP VQ D++HWPF+VVS  G KP + V YKGEEK F PEEISSMVLTKMKE AEAYLGH V NAV+TVPAYFNDSQRQATKDAG +AGLN++RIINEPTAAAIAYG
Sbjct:    3 TKGVAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQCDLKHWPFQVVSDEG-KPKVKVEYKGEEKSFFPEEISSMVLTKMKETAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVLAGLNILRIINEPTAAAIAYG 185          
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HS7C2_DICDI (Heat shock cognate 70 kDa protein 2 OS=Dictyostelium discoideum GN=hspE-1 PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.191e-83
Identity = 150/180 (83.33%), Postives = 163/180 (90.56%), Query Frame = 3
Query:  138 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            +IGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAF +TERLIGDAAKNQVAMNP NT+FDAKRLIGR+FSDP +QSDM+HWPFKV++  GDKP + V +KGE K FSPEE+SSMVL KMKE AEAYLG  + NAV+TVPAYFNDSQRQATKDAGAIA LNV RIINEPTAAAIAYG
Sbjct:    4 SIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFNETERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFSDPVIQSDMKHWPFKVIAKEGDKPHLQVEFKGEVKTFSPEEVSSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGAIAKLNVQRIINEPTAAAIAYG 183          
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HSP71_CANFA (Heat shock 70 kDa protein 1 OS=Canis familiaris GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.032e-83
Identity = 154/180 (85.56%), Postives = 167/180 (92.78%), Query Frame = 3
Query:  138 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            AIGIDLGTTYSCVGV+Q+ +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NPQNTVFDAKRLIGR+F DP VQSDM+HWPF+VV+  GDKP + V+YKGE K F PEEISSMVLTKMKEIAEAYLG+ V NAV+TVPAYFNDSQRQATKDAG IAGLNV+RIINEPTAAAIAYG
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVVN-DGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYG 184          
BLAST of FC920905 vs. ExPASy Swiss-Prot
Match: HS7C1_DICDI (Heat shock cognate 70 kDa protein 1 OS=Dictyostelium discoideum GN=hspB PE=1 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 2.032e-83
Identity = 153/180 (85.00%), Postives = 161/180 (89.44%), Query Frame = 3
Query:  138 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMRHWPFKVVSGPGDKPMIVVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG 677
            +IGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NTVFDAKRLIGR+FSD  VQSDM+HWPFKV+   GDKP I V +KGE K FSPEEISSMVL KMKE AEAYLG  + NAV+TVPAYFNDSQRQATKDAG I+ LNV RIINEPTAAAIAYG
Sbjct:    3 SIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPEEISSMVLLKMKETAEAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKLNVQRIINEPTAAAIAYG 182          
The following BLAST results are available for this feature:
BLAST of FC920905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_RAT3.134e-8484.04Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP70_TRYCR4.094e-8484.44Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=... [more]
HS71B_BOVIN4.094e-8485.56Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA... [more]
HS71B_BOSMU4.094e-8485.56Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HS71A_BOVIN4.094e-8485.56Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA... [more]
HS71B_PIG6.983e-8485.00Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HSP70_XENLA9.120e-8483.15Heat shock 70 kDa protein OS=Xenopus laevis PE=2 S... [more]
HS7C2_DICDI1.191e-8383.33Heat shock cognate 70 kDa protein 2 OS=Dictyosteli... [more]
HSP71_CANFA2.032e-8385.56Heat shock 70 kDa protein 1 OS=Canis familiaris GN... [more]
HS7C1_DICDI2.032e-8385.00Heat shock cognate 70 kDa protein 1 OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionC32014F04EF RVDevelop1 Citrus clementina cDNA clone C32014F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920905 ID=FC920905; Name=FC920905; organism=Citrus clementina; type=EST; length=678bp
GAGATCAAACAACGGCAAAGCACTCAAATTCACTACACAAATCACATTCT
TGAATTCTCCCTTTCATTCTGTAAAACTGTTAAACACTTTCTTGGTTCTT
GAATTTCTGCACAATGGCAGCAAAAACTGAAGGCAAGGCCATCGGCATAG
ACCTTGGAACGACTTACAGCTGCGTTGGAGTATGGCAAAACGATCGCGTA
GAGATCATAGCCAATGATCAAGGCAACAGAACCACTCCCTCCTATGTTGC
CTTTACTGACACGGAACGTCTCATCGGCGATGCGGCTAAAAACCAAGTCG
CCATGAACCCTCAGAACACTGTTTTCGACGCCAAACGACTCATCGGCAGG
CGATTCTCCGACCCGTCGGTTCAGAGCGACATGAGGCACTGGCCGTTTAA
GGTTGTTTCAGGGCCTGGCGACAAGCCTATGATTGTTGTTACTTACAAAG
GCGAAGAGAAACGGTTTTCACCTGAGGAAATCTCTTCTATGGTGTTGACT
AAGATGAAGGAGATTGCCGAGGCTTATCTTGGTCACGCTGTGAAGAACGC
TGTGGTCACTGTTCCTGCTTATTTTAATGACTCTCAAAGGCAGGCAACGA
AGGATGCTGGTGCTATTGCTGGGTTGAATGTCATGAGAATCATCAATGAG
CCTACCGCTGCTGCTATTGCTTATGGCT
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