FC920907

Overview
NameFC920907
Unique NameFC920907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7802 contig Ccv1_Contig7802:130..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A5_HUMAN (Prestin OS=Homo sapiens GN=SLC26A5 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 53/160 (33.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  214 YIF-PILEWGPNYSFKLFK-SDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEV--------------SPTQNPVXXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIV 645
            Y+F PI +W P Y FK +   D++SG++   L +PQG+++A LA +PPI GLYSSF P ++Y  LG+SR +++GP ++ SL++G +  + V                                  G++Q  LG+ R GF+  +L++  + GF   AA+ V
Sbjct:   62 YMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPIFGLYSSFYPVIMYCFLGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHV 221          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A5_RAT (Prestin OS=Rattus norvegicus GN=Slc26a5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 62/200 (31.00%), Postives = 101/200 (50.50%), Query Frame = 1
Query:   97 HKSTIEKLKRRLKETFFPDDPLRQ-FKGQPLGKKWILAAQYIF-PILEWGPNYSFKLFK-SDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEV--------------SPTQNPVXXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIV 645
            H    E+L  + K T    D L+Q F   P   + I+   Y+F PI +W P Y FK +   D++SG++   L +PQG+++A LA +PP+ GLYSSF P ++Y   G+SR +++GP ++ SL++G +  + V                                  G++Q  LG+ R GF+  +L++  + GF   AA+ V
Sbjct:   25 HPVLQERLHVKDKVTDSIGDKLKQAFTCTPKKVRNII---YMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHV 221          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A5_MOUSE (Prestin OS=Mus musculus GN=Slc26a5 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 1
Query:   97 HKSTIEKLKRRLKETFFPDDPLRQ-FKGQPLGKKWILAAQYIF-PILEWGPNYSFKLFK-SDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEV--------------SPTQNPVXXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIV 645
            H    E+L  + K T    D L+Q F   P   K I    Y+F PI +W P Y FK +   D++SG++   L +PQG+++A LA +PP+ GLYSSF P ++Y   G+SR +++GP ++ SL++G +  + V                                  G++Q  LG+ R GF+  +L++  + GF   AA+ V
Sbjct:   25 HPVLQERLHVKDKVTESIGDKLKQAFTCTP---KKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHV 221          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A5_MERUN (Prestin OS=Meriones unguiculatus GN=SLC26A5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 66/216 (30.56%), Postives = 107/216 (49.54%), Query Frame = 1
Query:   52 LEIATMEVHRVVPP-PHKSTIEKLKRRLKETFFPDDPLRQ-FKGQPLGKKWILAAQYIF-PILEWGPNYSFKLFK-SDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEV--------------SPTQNPVXXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIV 645
            + +AT + H   P   H    E+L  + K +    D L+Q F   P   K I    Y+F PI +W P Y FK +   D++SG++   L +PQG+++A LA +PP+ GLYSSF P ++Y   G+SR +++GP ++ SL++G +  + V                                  G++Q  LG+ R GF+  +L++  + GF   AA+ V
Sbjct:    9 IPVATQKYHVERPIFSHPVLQERLHVKDKVSESIGDKLKQAFTCTP---KKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHV 221          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: SULX_YEAST (Putative sulfate transporter YPR003C OS=Saccharomyces cerevisiae GN=YPR003C PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 48/145 (33.10%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  214 YIFPILEWGPNYSFKLFKSDIISGLTIASLAIPQGISYA-KLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNPVXXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIV 645
            Y  P   W P Y+F     D+I+G+++AS  IP  +SY   +A++PP+ GLYS  + P VY +LGS   + VGP S  SL++G  + + ++  +  V             G +    G+ R GF+ + LSKA L GF++   +++
Sbjct:  103 YYLPCFSWLPEYTFNKLWGDVIAGISVASFQIPLALSYTTSIAHVPPLCGLYSLAISPFVYGILGSVPQMIVGPESAISLVVGQAV-ESITLHKENVSLIDISTVITFVSGTILLFSGISRFGFLGNVLSKALLRGFISSVGLVM 246          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A2_RAT (Sulfate transporter OS=Rattus norvegicus GN=Slc26a2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 65/256 (25.39%), Postives = 111/256 (43.36%), Query Frame = 1
Query:   61 ATMEVHRVVPPPHKSTIEKLKRRLKETFFPDDPLRQFKGQPLGKKWILAAQYI-------FPILEWGPNYSFKL-FKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNPVXXXXXXXXXXXXG-----------------------------GLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQHSKAFLDHSFHKPMGLXPVMS 717
            ++ ++ +  P   +    ++   L E   PD  +RQ   + L K     A  I       FP+L W P Y  K     D++SGL +  L +PQ I+Y+ LA   PI GLY+SF   ++Y + G+SR ++VG   I  L++G ++ +E+      +            G                             G+ Q ++G  ++GF+  +LS A L GF+ GA+  +    +K  L  S  +  G+  V++
Sbjct:   35 SSTDLRQFEPSDRRRAFRRIHMELHEK--PDTNIRQLVMRKLQKSCQCNATKIRNRIFDFFPVLRWLPKYDLKKNILGDMMSGLIVGILLVPQSIAYSLLAGQEPIYGLYTSFFASIIYFLFGTSRHISVGIFGILCLMIGEVVDRELHKACPDIDTTSSSIAMFSNGCVVVNHTLDGLCDKSCYAIKIGSTVTFMAGVYQVAMGFFQVGFVSVYLSDALLSGFVTGASFTILTSQAKYLLGLSLPRSNGVGSVIT 288          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A2_MOUSE (Sulfate transporter OS=Mus musculus GN=Slc26a2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 61/227 (26.87%), Postives = 101/227 (44.49%), Query Frame = 1
Query:  148 PDDPLRQFKGQPLGKKWILAAQYI-------FPILEWGPNYSFKL-FKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNPVXXXXXXXXXXXXG-----------------------------GLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQHSKAFLDHSFHKPMGLXPVMS 717
            PD  ++QF  + L K    +A  +       FP+L W P Y  K     D++SGL +  L +PQ I+Y+ LA   PI GLY+SF   ++Y + G+SR ++VG   I  L++G ++ +E+                   G                             G+ Q ++G  ++GF+  +LS A L GF+ GA+  +    +K  L  S  +  G+  V++
Sbjct:   62 PDTDIKQFVIRELQKSCQCSAAKVRDGAFDFFPVLRWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPIYGLYTSFFASIIYFLFGTSRHISVGIFGILCLMIGEVVDRELHKACPDTDATSSSIAVFSSGCVVVNHTLDGLCDKSCYAIKIGSTVTFMAGVYQVAMGFFQVGFVSVYLSDALLSGFVTGASFTILTSQAKYLLGLSLPRSHGVGSVIT 288          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A2_BUBBU (Sulfate transporter OS=Bubalus bubalis GN=SLC26A2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 56/189 (29.63%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  223 PILEWGPNYSFKL-FKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEV----------------SPTQNPVXXXXXXXXXXXXG-------GLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQHSKAFLDHSFHKPMGLXPVMS 717
            P+L+W P Y  K     D++SGL +  L +PQ I+Y+ LA   PI GLY+SF   L+Y +LG+SR ++VG   I  L++G ++ +E+                   Q P             G       G+ Q ++G  ++GF+  +LS A L GF+ GA+  +     K  L  S  +  G+  +++
Sbjct:   95 PVLQWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPIYGLYTSFFASLIYFILGTSRHISVGIFGILCLMIGEVVDRELYIAGYDAVHAASNESSLVNQMPDKTCDRSCYAIIVGSTVTFVAGVYQVAMGFFQVGFVSVYLSDALLGGFVTGASFTILTSQVKYLLGLSLPRSAGVGSLIT 283          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A2_HORSE (Sulfate transporter OS=Equus caballus GN=SLC26A2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 54/195 (27.69%), Postives = 93/195 (47.69%), Query Frame = 1
Query:  223 PILEWGPNYSFKL-FKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQE----------VSPTQNPV-------------------XXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQHSKAFLDHSFHKPMGLXPVMS 717
            P+L+W P Y  K     D++SGL +  L +PQ I+Y+ LA   PI GLY+SF   L+Y +LG+SR ++VG   +  L++G ++ +E          ++P+   V                                G+ Q ++G  ++GF+  +LS A L GF+ GA+  +    +K  L  S  +  G+  +++
Sbjct:   96 PVLQWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPIYGLYTSFFASLIYFLLGTSRHISVGIFGVLCLMIGEVVDRELLKAGYDTVHIAPSLGMVSNGSTSLNQTSDRICDRSCYAIKVGSTVTFLAGIYQVAMGFFQVGFVSVYLSDALLSGFVTGASFTILTSQAKYLLGLSLPRSSGVGSLIT 290          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A2_BOVIN (Sulfate transporter OS=Bos taurus GN=SLC26A2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 55/189 (29.10%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  223 PILEWGPNYSFKL-FKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEV--------------SPTQNPV---------XXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQHSKAFLDHSFHKPMGLXPVMS 717
            P+L+W P Y  K     D++SGL +  L +PQ I+Y+ LA   PI GLY+SF   L+Y +LG+SR ++VG   I  L++G ++ +E+              S   N +                      G+ Q ++G  ++GF+  +LS A L GF+ GA+  +     K  L  S  +  G+  +++
Sbjct:   95 PVLQWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPIYGLYTSFFASLIYFILGTSRHISVGIFGILCLMIGEVVDRELYIAGYDTVHAASNESSLVNQISDKTCDRSCYAIIVGSTVTFVAGVYQVAMGFFQVGFVSVYLSDALLGGFVTGASFTILTSQVKYLLGLSLPRSAGVGSLIT 283          
The following BLAST results are available for this feature:
BLAST of FC920907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
S26A5_HUMAN1.491e-1833.13Prestin OS=Homo sapiens GN=SLC26A5 PE=2 SV=1[more]
S26A5_RAT4.338e-1831.00Prestin OS=Rattus norvegicus GN=Slc26a5 PE=1 SV=1[more]
S26A5_MOUSE4.338e-1831.50Prestin OS=Mus musculus GN=Slc26a5 PE=2 SV=2[more]
S26A5_MERUN4.338e-1830.56Prestin OS=Meriones unguiculatus GN=SLC26A5 PE=1 S... [more]
SULX_YEAST7.400e-1833.10Putative sulfate transporter YPR003C OS=Saccharomy... [more]
S26A2_RAT2.812e-1725.39Sulfate transporter OS=Rattus norvegicus GN=Slc26a... [more]
S26A2_MOUSE2.812e-1726.87Sulfate transporter OS=Mus musculus GN=Slc26a2 PE=... [more]
S26A2_BUBBU1.069e-1629.63Sulfate transporter OS=Bubalus bubalis GN=SLC26A2 ... [more]
S26A2_HORSE1.396e-1627.69Sulfate transporter OS=Equus caballus GN=SLC26A2 P... [more]
S26A2_BOVIN1.396e-1629.10Sulfate transporter OS=Bos taurus GN=SLC26A2 PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014F06EF RVDevelop1 Citrus clementina cDNA clone C32014F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920907 ID=FC920907; Name=FC920907; organism=Citrus clementina; type=EST; length=719bp
GATAGCAGCAACGACAACAATTCGATGCAGCTGCAGCATCATAGCAGCTG
CTTAGAGATAGCAACAATGGAGGTGCACAGAGTCGTGCCACCACCGCATA
AAAGCACAATAGAGAAGCTGAAAAGAAGGCTCAAAGAAACCTTCTTCCCC
GATGACCCTTTGCGCCAATTCAAAGGGCAGCCATTAGGGAAGAAATGGAT
CCTTGCTGCCCAGTACATATTCCCTATCCTTGAATGGGGCCCTAATTACA
GCTTCAAGCTCTTCAAATCTGATATCATATCTGGCCTCACCATTGCCAGC
TTGGCCATTCCTCAGGGTATCAGTTATGCAAAGCTTGCCAATCTTCCTCC
AATAGTTGGTCTCTATTCAAGCTTTGTGCCTCCTCTTGTGTATACTGTGC
TTGGAAGCTCAAGGGATCTTGCAGTTGGGCCAGTTTCAATTGCTTCTCTT
ATTATGGGATCAATGCTTAGACAAGAAGTATCTCCCACTCAGAATCCTGT
TCTGTTTCTTCAACTAGCTTTTACAGCTACTTTTTTCGGTGGTCTTGTCC
AAGCTTCACTAGGATTATTAAGGCTCGGATTTATCATTGATTTTCTATCG
AAGGCAACTCTCATCGGGTTCATGGCAGGGGCTGCCATTATAGTCTCTCT
TCAACACTCAAAAGCCTTCTTGGATCACTCATTTCACAAACCAATGGGTT
TGGNTCCTGTTATGAGCTC
back to top