FC920907

Overview
NameFC920907
Unique NameFC920907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A7_PONAB (Anion exchange transporter OS=Pongo abelii GN=SLC26A7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 42/167 (25.15%), Postives = 76/167 (45.51%), Query Frame = 1
Query:  223 PILEWGPNYSFKL-FKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQN----------------PVXXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQHSKAFL 672
            PIL+W P+Y+ K     D +SG+ +A   + QG+++A L+++ P+ GLY S  P ++Y + G  R +A G  ++ SLI  + + + V                      +            GG++Q ++ +L+LG     +++  +     GAA  V     K  L
Sbjct:   33 PILDWAPHYNLKENLLPDTVSGIMLAVQQVTQGLAFAVLSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISANAVERIVPQNMQNLTTQSNTSVLGLSDFEMQRIRVAAAVSFLGGVIQVAMFVLQLGSATFVVTEPVISAMTTGAATHVVTSQVKYLL 199          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S26A8_MOUSE (Testis anion transporter 1 OS=Mus musculus GN=Slc26a8 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 48/189 (25.40%), Postives = 89/189 (47.09%), Query Frame = 1
Query:  193 KWILAAQYIFPILEWGPNYSFK-LFKSDIISGLTIASLAIPQGISYAKLAN--LPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIAS----------------LIMGSMLRQEVS-PT--QNPVXXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQHSKAFLD--HSFH 687
            K++     +FP LEW   Y FK     D+++GL++  + +PQG+  + L    +PP+   Y++F   ++Y + GS   +++GP  + S                LI+G+ ++ + S PT   +               G++Q S+G+L +GF+  +L +A    ++A  A+ + L      L    SFH
Sbjct:   66 KFLRCMLTVFPFLEWICLYRFKDWLLGDLLAGLSVGLVQVPQGLILSLLTRQLIPPLNVTYAAFCSSVIYVIFGSCHQMSIGPFFLVSALMINVLKDRPFNNGHLILGTFVKDDFSVPTFYLSYNRSLSMVASTTFLTGIIQLSMGMLGMGFMATYLPEAATSAYLAAVALHIILAQMTCILGIMVSFH 254          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: S2610_HUMAN (Solute carrier family 26 member 10 OS=Homo sapiens GN=SLC26A10 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 44/148 (29.73%), Postives = 74/148 (50.00%), Query Frame = 1
Query:  289 TIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQ-----------EVSPTQNPVXXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQHSKAFLDHSFHKPMG 699
            T  S +IP G+++A LA++PP+ GLY+SF P L+Y++LG+ R L+ G  +I SL+ GS + +            +   Q                G +   + +L+LG +  FLS+  +    +GAA+ V L    + L  S  + +G
Sbjct:   33 TFPSTSIP-GMAFALLASVPPVFGLYTSFFPVLIYSLLGTGRHLSTGTFAILSLMTGSAVERLVPEPLVGNLSGIEKEQLDAQRVGVAAAVAFGSGALMLGMFVLQLGVLSTFLSEPVVKALTSGAALHVLLSQLPSLLGLSLPRQIG 179          
BLAST of FC920907 vs. ExPASy Swiss-Prot
Match: SULH3_SCHPO (Probable sulfate permease C320.05 OS=Schizosaccharomyces pombe GN=SPCC320.05 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 43/165 (26.06%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  214 YIFPILEWGPNYSFKLFKSDIISGLTIASLAIPQGISYAK-LANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEV-SPTQNP-VXXXXXXXXXXXXGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQHSKAFLDHSFHKPMG 699
            Y  P+L W PNYS +    D+++G + A L++P  +S+A+    +PPI  L  + + P++Y +  +   +++GP +   L++   + Q V S    P               G++  + GL RLGF+   +S   L G +   ++I+ +     F   S  K  G
Sbjct:   61 YYIPVLHWLPNYSLRNIIWDVLAGCSTACLSVPIALSFAQTFLGVPPIYILTGTAIGPILYCLFTACPLISIGPEAGMCLLIAENIHQRVLSKADVPQETAILVTGLIAFIAGIINLAAGLFRLGFLDALVSPVLLRGCILSISMIIMINQGSVFFGFSGVKYKG 225          
The following BLAST results are available for this feature:
BLAST of FC920907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
S26A7_PONAB3.011e-1125.15Anion exchange transporter OS=Pongo abelii GN=SLC2... [more]
S26A8_MOUSE6.708e-1125.40Testis anion transporter 1 OS=Mus musculus GN=Slc2... [more]
S2610_HUMAN6.708e-1129.73Solute carrier family 26 member 10 OS=Homo sapiens... [more]
SULH3_SCHPO8.761e-1126.06Probable sulfate permease C320.05 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionC32014F06EF RVDevelop1 Citrus clementina cDNA clone C32014F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920907 ID=FC920907; Name=FC920907; organism=Citrus clementina; type=EST; length=719bp
GATAGCAGCAACGACAACAATTCGATGCAGCTGCAGCATCATAGCAGCTG
CTTAGAGATAGCAACAATGGAGGTGCACAGAGTCGTGCCACCACCGCATA
AAAGCACAATAGAGAAGCTGAAAAGAAGGCTCAAAGAAACCTTCTTCCCC
GATGACCCTTTGCGCCAATTCAAAGGGCAGCCATTAGGGAAGAAATGGAT
CCTTGCTGCCCAGTACATATTCCCTATCCTTGAATGGGGCCCTAATTACA
GCTTCAAGCTCTTCAAATCTGATATCATATCTGGCCTCACCATTGCCAGC
TTGGCCATTCCTCAGGGTATCAGTTATGCAAAGCTTGCCAATCTTCCTCC
AATAGTTGGTCTCTATTCAAGCTTTGTGCCTCCTCTTGTGTATACTGTGC
TTGGAAGCTCAAGGGATCTTGCAGTTGGGCCAGTTTCAATTGCTTCTCTT
ATTATGGGATCAATGCTTAGACAAGAAGTATCTCCCACTCAGAATCCTGT
TCTGTTTCTTCAACTAGCTTTTACAGCTACTTTTTTCGGTGGTCTTGTCC
AAGCTTCACTAGGATTATTAAGGCTCGGATTTATCATTGATTTTCTATCG
AAGGCAACTCTCATCGGGTTCATGGCAGGGGCTGCCATTATAGTCTCTCT
TCAACACTCAAAAGCCTTCTTGGATCACTCATTTCACAAACCAATGGGTT
TGGNTCCTGTTATGAGCTC
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