FC920914

Overview
NameFC920914
Unique NameFC920914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BRUC2 (Probable potassium transport system protein kup OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=kup PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 66/223 (29.60%), Postives = 110/223 (49.33%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  +S+ +Q   L   PR++I HTS K+HGQIYIP +N  L L  + + +GF  + ++  A G+AV   MLVTT L+ +V+   W+               ++ L+FSA++IK  EG W  I ++ + ++ M+ W  GT   ++   + +V ++ I+          V G  +  T      P    H + +    H+  V L + +   P V   +R
Sbjct:  330 SQAVITGAYSVARQAVQLNILPRLEIQHTSEKLHGQIYIPRVNLLLGLAVVILVLGFEKSSNLAAAYGIAVTGNMLVTTVLLYIVMTRIWNWRVSRALPIILGFLVIDMLFFSANIIKVHEGGWASIGIATVLVLIMWTWVRGTRHLFQKTRKAEVPLDLIVEQMAKRPPTIVPGTAVFLTGDPKSAPTALMHSLKHYKVLHENNVILTVVTASKPWVASADR 552          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_XANCP (Probable potassium transport system protein kup OS=Xanthomonas campestris pv. campestris GN=kup PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 69/229 (30.13%), Postives = 114/229 (49.78%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGI---VRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+IT  +S+ +Q   LG  PR+ I HTS    GQIY+P INW LM++ +A+ + FR + ++  A G++V   ML+ T L++LV    W +              +E  +  A+  K L+GAW P+AL  +    M  W  G     E   ++ + I+  L   P L +    RV G+ +  T     +P    H + +    H+  +FL + ++P+P+   D+R  +
Sbjct:  313 SQAVITGAYSVARQAMQLGYIPRMLIKHTSRDTIGQIYVPGINWLLMVMVIALVLIFRSSTNLAVAYGISVSMTMLIDTLLLALVARSLWPRWRNWVLPLCVVFFIIELAFVIANGAKLLQGAWFPLALGIVVFTLMRTWRRGRALLREEIRKDGIRIDSFL---PGLMLAPPARVPGMAVFLTADPMVVPHALMHNLKHNKVLHERNIFLNVDTLPIPYAPADKRLQI 538          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_XANC8 (Probable potassium transport system protein kup OS=Xanthomonas campestris pv. campestris (strain 8004) GN=kup PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 69/229 (30.13%), Postives = 114/229 (49.78%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGI---VRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+IT  +S+ +Q   LG  PR+ I HTS    GQIY+P INW LM++ +A+ + FR + ++  A G++V   ML+ T L++LV    W +              +E  +  A+  K L+GAW P+AL  +    M  W  G     E   ++ + I+  L   P L +    RV G+ +  T     +P    H + +    H+  +FL + ++P+P+   D+R  +
Sbjct:  313 SQAVITGAYSVARQAMQLGYIPRMLIKHTSRDTIGQIYVPGINWLLMVMVIALVLIFRSSTNLAVAYGISVSMTMLIDTLLLALVARSLWPRWRNWVLPLCVVFFIIELAFVIANGAKLLQGAWFPLALGIVVFTLMRTWRRGRALLREEIRKDGIRIDSFL---PGLMLAPPARVPGMAVFLTADPMVVPHALMHNLKHNKVLHERNIFLNVDTLPIPYAPADKRLQI 538          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURPS (Probable potassium transport system protein kup OS=Burkholderia pseudomallei GN=kup PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 63/230 (27.39%), Postives = 116/230 (50.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  +S+  Q   LG  PR+KI+HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L ++V+V  W+ +             ++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T   + +P    H + +    H+  +F+   +  +P+V+  ER  V
Sbjct:  308 SQAVISGAYSLTSQAIQLGYVPRMKILHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTILAAVVMVKVWNWNKLLVAMIIGVFLVIDLGFFGANLLKVEQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLAPFLQGLLAHPPH----RVSGTAIYLTGNDTLVPVSLLHNLKHNKVLHERTIFMTFVTRDIPYVKDHERVTV 533          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURP6 (Probable potassium transport system protein kup OS=Burkholderia pseudomallei (strain 668) GN=kup PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 63/230 (27.39%), Postives = 116/230 (50.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  +S+  Q   LG  PR+KI+HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L ++V+V  W+ +             ++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T   + +P    H + +    H+  +F+   +  +P+V+  ER  V
Sbjct:  308 SQAVISGAYSLTSQAIQLGYVPRMKILHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTILAAVVMVKVWNWNKLLVAMIIGVFLVIDLGFFGANLLKVEQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLAPFLQGLLAHPPH----RVSGTAIYLTGNDTLVPVSLLHNLKHNKVLHERTIFMTFVTRDIPYVKDHERVTV 533          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURP1 (Probable potassium transport system protein kup OS=Burkholderia pseudomallei (strain 1710b) GN=kup PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 63/230 (27.39%), Postives = 116/230 (50.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  +S+  Q   LG  PR+KI+HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L ++V+V  W+ +             ++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T   + +P    H + +    H+  +F+   +  +P+V+  ER  V
Sbjct:  308 SQAVISGAYSLTSQAIQLGYVPRMKILHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTILAAVVMVKVWNWNKLLVAMIIGVFLVIDLGFFGANLLKVEQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLAPFLQGLLAHPPH----RVSGTAIYLTGNDTLVPVSLLHNLKHNKVLHERTIFMTFVTRDIPYVKDHERVTV 533          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURP0 (Probable potassium transport system protein kup OS=Burkholderia pseudomallei (strain 1106a) GN=kup PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 63/230 (27.39%), Postives = 116/230 (50.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  +S+  Q   LG  PR+KI+HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L ++V+V  W+ +             ++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T   + +P    H + +    H+  +F+   +  +P+V+  ER  V
Sbjct:  308 SQAVISGAYSLTSQAIQLGYVPRMKILHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTILAAVVMVKVWNWNKLLVAMIIGVFLVIDLGFFGANLLKVEQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLAPFLQGLLAHPPH----RVSGTAIYLTGNDTLVPVSLLHNLKHNKVLHERTIFMTFVTRDIPYVKDHERVTV 533          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURMS (Probable potassium transport system protein kup OS=Burkholderia mallei (strain SAVP1) GN=kup PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 63/230 (27.39%), Postives = 116/230 (50.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  +S+  Q   LG  PR+KI+HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L ++V+V  W+ +             ++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T   + +P    H + +    H+  +F+   +  +P+V+  ER  V
Sbjct:  308 SQAVISGAYSLTSQAIQLGYVPRMKILHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTILAAVVMVKVWNWNKLLVAMIIGVFLVIDLGFFGANLLKVEQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLAPFLQGLLAHPPH----RVSGTAIYLTGNDTLVPVSLLHNLKHNKVLHERTIFMTFVTRDIPYVKDHERVTV 533          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURMA (Probable potassium transport system protein kup OS=Burkholderia mallei GN=kup PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 63/230 (27.39%), Postives = 116/230 (50.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  +S+  Q   LG  PR+KI+HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L ++V+V  W+ +             ++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T   + +P    H + +    H+  +F+   +  +P+V+  ER  V
Sbjct:  308 SQAVISGAYSLTSQAIQLGYVPRMKILHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTILAAVVMVKVWNWNKLLVAMIIGVFLVIDLGFFGANLLKVEQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLAPFLQGLLAHPPH----RVSGTAIYLTGNDTLVPVSLLHNLKHNKVLHERTIFMTFVTRDIPYVKDHERVTV 533          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURM9 (Probable potassium transport system protein kup OS=Burkholderia mallei (strain NCTC 10229) GN=kup PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 63/230 (27.39%), Postives = 116/230 (50.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  +S+  Q   LG  PR+KI+HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L ++V+V  W+ +             ++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T   + +P    H + +    H+  +F+   +  +P+V+  ER  V
Sbjct:  308 SQAVISGAYSLTSQAIQLGYVPRMKILHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTILAAVVMVKVWNWNKLLVAMIIGVFLVIDLGFFGANLLKVEQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLAPFLQGLLAHPPH----RVSGTAIYLTGNDTLVPVSLLHNLKHNKVLHERTIFMTFVTRDIPYVKDHERVTV 533          
The following BLAST results are available for this feature:
BLAST of FC920914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
KUP_BRUC24.383e-2529.60Probable potassium transport system protein kup OS... [more]
KUP_XANCP5.724e-2530.13Probable potassium transport system protein kup OS... [more]
KUP_XANC85.724e-2530.13Probable potassium transport system protein kup OS... [more]
KUP_BURPS5.724e-2527.39Probable potassium transport system protein kup OS... [more]
KUP_BURP65.724e-2527.39Probable potassium transport system protein kup OS... [more]
KUP_BURP15.724e-2527.39Probable potassium transport system protein kup OS... [more]
KUP_BURP05.724e-2527.39Probable potassium transport system protein kup OS... [more]
KUP_BURMS5.724e-2527.39Probable potassium transport system protein kup OS... [more]
KUP_BURMA5.724e-2527.39Probable potassium transport system protein kup OS... [more]
KUP_BURM95.724e-2527.39Probable potassium transport system protein kup OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014G04EF RVDevelop1 Citrus clementina cDNA clone C32014G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920914 ID=FC920914; Name=FC920914; organism=Citrus clementina; type=EST; length=683bp
GGAAGTCAAGCCATTATCACTGCAACTTTCTCGATAATAAAACAGTGCTC
TGCTTTGGGTTGCTTTCCAAGGGTCAAAATCATTCATACATCTTCCAAAA
TACATGGCCAGATTTACATTCCAGAGATCAACTGGACATTAATGCTTTTA
TGCTTGGCTATTACTGTTGGTTTTAGAGACACAAAACACATGGGGAACGC
ATCAGGTTTAGCAGTTATAACTGTCATGCTGGTAACAACCTGTCTAATGT
CTCTGGTCATTGTCTTATGCTGGCATCAGAGCATTTTCTTTGCCATTTGT
TTTATAATCTTCTTCGGCTCGGTTGAAGCACTTTACTTTTCAGCATCCCT
CATCAAGTTCTTAGAAGGGGCATGGGTTCCTATTGCCCTCTCATTTATTT
TTCTAGTTGCTATGTATGTTTGGCACTATGGCACACTCAAGAAATATGAG
TTTGATGTTCAAAATAAGGTCTCCATCAACTGGATTTTGAGCTTAGGCCC
GAATCTGGGAATTGTTAGGGTCCGGGGTATTGGCCTTATACATACAGAGC
TAGTTTCTGGAATCCCAGCAATTTTCTCTCACTTTGTCACCAACCTTCCA
GCTTTTCACCAGGTTGTGGTCTTCCTCTGCATCAAATCAGTTCCAGTGCC
ACATGTCAGACCAGACGAAAGGTTCCTGGTGGG
back to top